RNA id: XM_043222690.1


Basic Information

Item Value
RNA id XM_043222690.1
length 1970
RNA type mRNA
GC content 0.48
exon number 8
gene id si:dkey-222f2.1
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3245640 ~ 3250629 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATGACagcttttatttgtaatgaGTTTACCACAGGGAGAGCAGTTAGTATGGGAATGTTGTTGACATGGGCCGCATTAAACATTTAGATGCAACATGAGCATGGTGAAACattaagagagagagacctcGAGAGCGAGCGTGTGTTCGCTGCCCATCCAGGAGCTCAGATAAAGCAGACACTGTGTACGTGTGTCCAATCTGAAACAGGTTTTCCCACAATAGGAACTCTCCACCCCATCCTGGCCGGACTTTAAAAGCCCAGCCTCTCTACAGAGAGACACCGTATCGCTCAGGTCTGCCCACCTGTTCTCATCCGAAACATCAGCTCTCCACGGTTTCTCCTGTCTAACTATGAGTCTGCGAAGCAAGCGCATCAGTTCGAGCAGCTCCGTGAGGAGCAGTGGGAAGATGGGAGGCTACGGCTACAGCAGCTTGAGCGGGATCTCCTTGGGAGCATCTGCCCCGAGCTTCAGCACCAGCTCGGCCTATCTGGGGCCACCCATCGCTAGCGTCTCCGTCAACAAGAGCCTGCTTGCGCCTCTCAACTTGGAGATCGACCCCAACATCCAAATGGTGCGCACTCAGGAGAAGGACCAGATCAAGTCGCTGAACAACCGCTTCGCCACCTTCATCGATAAGGTTCGCTTCCTGGAGCAGCAGAATAAGATGCTGGAGACCAAGTTTGAGCTGCTGCAGGGTCAGACCCCGGGCCGGTCCAACGTCGAGCCCATGTTTGAGGCTTACATGGCCAACTTGCGCAGACAGATGGACGTGGTCAACAATGACAGGACCAAGCTGGACGGAGAGCTGAGGAACATGCAGGGACTGGTGGAGGACTTCAAACACAAATATGAAGATGAGATCAACAAGAGGAACAACCTGGAGAACGACTTTGTGATCCTGAAAAAGGATGTAGACTCTGCATATCTGGTGAAAGCTGATTTGGAGGACAAAGTGGGTGCCCTGACTGATGAGATCAACTTTCTGAGGACCATCTACGATGAGGAATTGCGCGAGCTGCAGGCCAGCATTAAAGACACGTCTGTCATTGTGCAAATGGACAACTCCCGAAACCTCAACATGGATCATATTGTGGCCGAAGTCAAGGCTCAATACGAGGAGATCGCAGCCAGGAGCCGCGAAGAGGCTGAATCCTGGTACAAGTCCAAGTTTGACCAGATGTCCTCTCAAGCCAATCAATACAACGACGAACTGCGCAACACTAAAGGAGAGATCGGAGACATCAACCGCATGATCAGCCGTCTGCAGAGTGAGATCGAGGTCATTAAGTCACAGCGCGCTAACCTGGAGAACCAGATAGCAGAGGCCGAGGATCGTGGCGAGATGACTGTGAAGGAGGCCAAAGGCCGTATTAAGGACTTGGAGGAAGCTCTTCAGAGAGCCAAGCAGGACATGGCCCGCCAGCTCCGCGAGTATCAGGAGCTCATGAATGTCAAATTGGCGCTGGACATCGAGATCGCCACCTACAGGAAGCTCCTGGAAGGAGAGGAGGACAGgtTCTAAAGGGGTGAATGGCTATCAGCAGAACAGCTCTCCATCACCTAAAATCCTGATCAAGACGACTGAAACCAGAAACAACACCAGATTCAGCACTCACTGAAGTGTTAATCAACAGAAAAAACACCATTCTATACCTATGGcagttaacattaaatatagaAGTAGTTTTCTTTTGACTTTCTATGAATCAGTGGGAGGaatctgaaattaattttctgAAAGAACAAAGCCTTTTGTTCcattcaatattatatatatactcaaaattaaaagactatataaactgaaattaaagatTGATTTATTCTACagaattcatttttcattattatactgCAATGCACCTAAAGCTTCTTTTTATGCCTCCAGTCTAAACTATTGCATGCGATCATTTAGTATCATTTTGGATTGGTGCTGTCAATCAATGCGAATTATAtggatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220346 lncRNA upstream 58 3245141 ~ 3245582 (+) True G148979
TU220339 lncRNA upstream 6702 3238523 ~ 3238938 (+) False dnase1l4.2
TU220338 lncRNA upstream 16810 3227704 ~ 3228830 (+) True G148975
TU220336 lncRNA upstream 19061 3225209 ~ 3226579 (+) True G148973
TU220299 lncRNA upstream 56486 3183528 ~ 3189154 (+) True G148942
TU220328 lncRNA downstream 3141 3253770 ~ 3254856 (+) False LOC122327575
TU220330 lncRNA downstream 4833 3255462 ~ 3257706 (+) True G148968
XR_006247671.1 lncRNA downstream 17494 3268123 ~ 3271755 (+) True LOC122327591
XR_006247670.1 lncRNA downstream 17494 3268123 ~ 3269766 (+) False LOC122327591
TU220372 lncRNA downstream 49972 3300601 ~ 3301244 (+) True G148994
XM_043222860.1 mRNA upstream 6682 3232170 ~ 3238958 (+) True dnase1l4.2
XM_043223028.1 mRNA upstream 21149 3223617 ~ 3224491 (+) True tma7
XM_043222798.1 mRNA upstream 49276 3193319 ~ 3196364 (+) True zgc:171566
XM_043222888.1 mRNA upstream 52538 3188402 ~ 3193102 (+) False LOC122327485
XM_043223029.1 mRNA downstream 3109 3253738 ~ 3254861 (+) True LOC122327575
XM_043222882.1 mRNA downstream 27552 3278181 ~ 3280208 (+) True LOC122327483
XM_043222883.1 mRNA downstream 27552 3278181 ~ 3280203 (+) False LOC122327483
XM_043222959.1 mRNA downstream 37291 3287920 ~ 3289605 (+) True zmp:0000000652
XM_043222605.1 mRNA downstream 46733 3297362 ~ 3304754 (+) False LOC122327325
TU220341 other upstream 9853 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 9853 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 9853 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 21150 3223628 ~ 3224490 (+) False tma7
XR_006247629.1 other upstream 93075 3114202 ~ 3152565 (+) False LOC122327293
XR_006247633.1 other downstream 46733 3297362 ~ 3304754 (+) True LOC122327325
TU220369 other downstream 46744 3297373 ~ 3592373 (+) False LOC122327325
TU220371 other downstream 46744 3297373 ~ 3592373 (+) False LOC122327325
TU220429 other downstream 320464 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 340010 3590639 ~ 3592373 (+) False LOC122327325

Expression Profile