RNA id: TU220346


Basic Information

Item Value
RNA id TU220346
length 442
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G148979
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3245141 ~ 3245582 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACAAAGCAAGCAAAAAGAAGTCTTACCAGTAGGTGGAGCTCTTATGTCTCTTATCATGACAActgatggaaaataaaacagcatgatTTTGGTGCATAGCAGTAGAATGTTTTTGCTATTTGAAATGCTTGGCATAAGTGCAAAAAAGTTCTCTGtcaaatgtgaccctggagcacaaaagctgtaaaaaataacaaaagtaaagatcatgttccactaatatatttaataaatttcctACCCTAAATaccaaaacttaatttttgtatctcggccaaatattgtcctatcctaacaaacatccatggaaagcttatttagtgtttattaatcttaattttataaaCTCTTATGACTGGTTATGTACTCAATATATTTGGTTAgcatattgttgttgttttttagaaCTGCCATCTTGCCAAAACTAGGTAGCTACTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220339 lncRNA upstream 6203 3238523 ~ 3238938 (+) False dnase1l4.2
TU220338 lncRNA upstream 16311 3227704 ~ 3228830 (+) True G148975
TU220336 lncRNA upstream 18562 3225209 ~ 3226579 (+) True G148973
TU220299 lncRNA upstream 55987 3183528 ~ 3189154 (+) True G148942
TU220266 lncRNA upstream 142238 3102572 ~ 3102903 (+) True G148926
TU220328 lncRNA downstream 8188 3253770 ~ 3254856 (+) False LOC122327575
TU220330 lncRNA downstream 9880 3255462 ~ 3257706 (+) True G148968
XR_006247671.1 lncRNA downstream 22541 3268123 ~ 3271755 (+) True LOC122327591
XR_006247670.1 lncRNA downstream 22541 3268123 ~ 3269766 (+) False LOC122327591
TU220372 lncRNA downstream 55019 3300601 ~ 3301244 (+) True G148994
XM_043222860.1 mRNA upstream 6183 3232170 ~ 3238958 (+) True dnase1l4.2
XM_043223028.1 mRNA upstream 20650 3223617 ~ 3224491 (+) True tma7
XM_043222798.1 mRNA upstream 48777 3193319 ~ 3196364 (+) True zgc:171566
XM_043222888.1 mRNA upstream 52039 3188402 ~ 3193102 (+) False LOC122327485
XM_043222690.1 mRNA downstream 58 3245640 ~ 3250629 (+) False si:dkey-222f2.1
XM_043222689.1 mRNA downstream 82 3245664 ~ 3250629 (+) True si:dkey-222f2.1
XM_043223029.1 mRNA downstream 8156 3253738 ~ 3254861 (+) True LOC122327575
XM_043222882.1 mRNA downstream 32599 3278181 ~ 3280208 (+) True LOC122327483
XM_043222883.1 mRNA downstream 32599 3278181 ~ 3280203 (+) False LOC122327483
TU220341 other upstream 9354 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 9354 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 9354 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 20651 3223628 ~ 3224490 (+) False tma7
XR_006247630.1 other upstream 92705 3114202 ~ 3152436 (+) False LOC122327293
XR_006247633.1 other downstream 51780 3297362 ~ 3304754 (+) True LOC122327325
TU220369 other downstream 51791 3297373 ~ 3592373 (+) False LOC122327325
TU220371 other downstream 51791 3297373 ~ 3592373 (+) False LOC122327325
TU220429 other downstream 325511 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 345057 3590639 ~ 3592373 (+) False LOC122327325

Expression Profile