RNA id: XM_043222883.1


Basic Information

Item Value
RNA id XM_043222883.1
length 1502
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC122327483
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3278181 ~ 3280208 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaaaaaggtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgcatgtgtgtatatgtatgtgtgaacTAGGAGGGTCAAGCGaccctcgttttttttttcttttgtcttatTAGAACAGACTTTGCCTCAACGGATGAAGAAAATGTTTCAcctgcttgttttgttttgttcgttGCGTCTGATTGGTGTGTTCAGCGAGTCGGTGTCAGTGATGGAGGGCGATTCTGTCACTTTACACACCGATGTTACTGAAATACATGAAGATGATGATATAGTGTGGAAAGTCGGAGCTGAAAAGTCTCTCATAGCTAAAATGAGTCTAGCTGCTGGAATCTTCTCTATATTTGATGATGTTCTTGACGGGAGATttagagacagactgaagctggacaatcagactggatctctgaccatcacgaaCATCTCAACTAATCACGCCGGCATTTATCAGCTAGATATTAGTGGATTTAAACTGAGATCAAAAACATCCAGAGTTTCTGTCTTGGctcgtCTGCCTGTTCCTGTCATCAGCAGTAACTCTTCAAACTGTTCTTTGTCTTCATCATCTTGTTCATTGTTGTGTTCGGCGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGCAGACTCTGTCACACGTGTGAAGAAGTACACATCTTTTGCTGCGGTTTTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCCCTGGTGGGCGTGGCTGCAGTAATTATTCTGGTTTATGACATCAGATCCAGAAGAGGAGGAGACAAGAAGCAGATATCATACATATTATGATACTTCCAGCTCTGTAAAGATGAAATATGTACAaggatttaatttcaaatacagTAATCAACGAGATAATAAGAgcaaataaattgtataaaatgtaatttttgcatttttatatagaattttaGAAGTAAACTCAATTTgagaaaaagtaatttaatgagGCTTAACCAGTGGCTTTAATTTTGATTATTGGCCAATAATGGATGAAAATGGTGCCTGTTCAATGACATTTCAATATCAATCGTTTCATAATATACTTTGGTTAATCGTGTTATTGTCATCATAGAATCTTGTTTATGGTTTAGCCTATAGAGCAATCTGTGATGGTTTTCTGACCTCTAGAGGTACTACAGGATATATGTGAACCAATAGCATGTGACTAATAACAtgacaaatataataatgtatgatCTAATATCAAACGGGGAGTGTTATAATAAAGATAGAAGATCCTGTGAATGTGTGGTTTAATTGGCGGAACCTAAAGCTGCATATTCTTCAATTATTAATGTTCATAACATCAGTATGGAGTGACTACGAGTATAGTATGTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247671.1 lncRNA upstream 6426 3268123 ~ 3271755 (+) True LOC122327591
XR_006247670.1 lncRNA upstream 8415 3268123 ~ 3269766 (+) False LOC122327591
TU220330 lncRNA upstream 20475 3255462 ~ 3257706 (+) True G148968
TU220328 lncRNA upstream 23325 3253770 ~ 3254856 (+) False LOC122327575
TU220346 lncRNA upstream 32599 3245141 ~ 3245582 (+) True G148979
TU220372 lncRNA downstream 20398 3300601 ~ 3301244 (+) True G148994
XR_006247669.1 lncRNA downstream 50516 3330719 ~ 3331434 (+) True LOC122327590
XR_006247674.1 lncRNA downstream 51428 3331631 ~ 3332025 (+) True LOC122327594
TU220404 lncRNA downstream 97883 3378086 ~ 3450520 (+) False G149013
TU220406 lncRNA downstream 97883 3378086 ~ 3380359 (+) True G149013
XM_043223029.1 mRNA upstream 23320 3253738 ~ 3254861 (+) True LOC122327575
XM_043222690.1 mRNA upstream 27552 3245640 ~ 3250629 (+) False si:dkey-222f2.1
XM_043222689.1 mRNA upstream 27552 3245664 ~ 3250629 (+) True si:dkey-222f2.1
XM_043222860.1 mRNA upstream 39223 3232170 ~ 3238958 (+) True dnase1l4.2
XM_043223028.1 mRNA upstream 53690 3223617 ~ 3224491 (+) True tma7
XM_043222959.1 mRNA downstream 7717 3287920 ~ 3289605 (+) True zmp:0000000652
XM_043222605.1 mRNA downstream 17159 3297362 ~ 3304754 (+) False LOC122327325
XM_043223024.1 mRNA downstream 85834 3366037 ~ 3367223 (+) True LOC122327571
XM_043223838.1 mRNA downstream 371867 3652070 ~ 3654665 (+) True LOC122328128
XM_043223840.1 mRNA downstream 447338 3727541 ~ 3729956 (+) True LOC122328130
TU220341 other upstream 42394 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 42394 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 42394 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 53691 3223628 ~ 3224490 (+) False tma7
XR_006247630.1 other upstream 125745 3114202 ~ 3152436 (+) False LOC122327293
XR_006247633.1 other downstream 17159 3297362 ~ 3304754 (+) True LOC122327325
TU220369 other downstream 17170 3297373 ~ 3592373 (+) False LOC122327325
TU220371 other downstream 17170 3297373 ~ 3592373 (+) False LOC122327325
TU220429 other downstream 290890 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 310436 3590639 ~ 3592373 (+) False LOC122327325

Expression Profile