RNA id: XR_006247669.1


Basic Information

Item Value
RNA id XR_006247669.1
length 335
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC122327590
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3330719 ~ 3331434 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATGATTTCACATTCCAAGATTTTCTCACTGAAGGTAAGTAGttaaaagcaAATTTGGGTTTGCAAGCTCTGCAGCTCTTCAAGTCTTTGATGACACAGACACCAATGTGGAGGAGGACATCTTCCAAGAACTGATTGAAGCCAATCCACATTTatgtttaactgttaaatgtCTGGAAGAACTTTCTGCTGGCCTGCCAGAGGTGAATACACCAACAAGATCCTCGACCCCCAGCACATGCACTGATACTCTTTCAGTCTCTTCAGCTGACTATGATGAGGCAGACATAGCAGTGAACAGGCAGTCTCCACGGGCTTGCAGCAGAGAGACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220372 lncRNA upstream 29475 3300601 ~ 3301244 (+) True G148994
XR_006247671.1 lncRNA upstream 58964 3268123 ~ 3271755 (+) True LOC122327591
XR_006247670.1 lncRNA upstream 60953 3268123 ~ 3269766 (+) False LOC122327591
TU220330 lncRNA upstream 73013 3255462 ~ 3257706 (+) True G148968
TU220328 lncRNA upstream 75863 3253770 ~ 3254856 (+) False LOC122327575
XR_006247674.1 lncRNA downstream 197 3331631 ~ 3332025 (+) True LOC122327594
TU220404 lncRNA downstream 46652 3378086 ~ 3450520 (+) False G149013
TU220406 lncRNA downstream 46652 3378086 ~ 3380359 (+) True G149013
TU220417 lncRNA downstream 50065 3381499 ~ 3392064 (+) True G149019
TU220411 lncRNA downstream 54240 3385674 ~ 3415304 (+) False G149016
XM_043222605.1 mRNA upstream 25965 3297362 ~ 3304754 (+) False LOC122327325
XM_043222959.1 mRNA upstream 41114 3287920 ~ 3289605 (+) True zmp:0000000652
XM_043222882.1 mRNA upstream 50511 3278181 ~ 3280208 (+) True LOC122327483
XM_043222883.1 mRNA upstream 50516 3278181 ~ 3280203 (+) False LOC122327483
XM_043223029.1 mRNA upstream 75858 3253738 ~ 3254861 (+) True LOC122327575
XM_043223024.1 mRNA downstream 34603 3366037 ~ 3367223 (+) True LOC122327571
XM_043223838.1 mRNA downstream 320636 3652070 ~ 3654665 (+) True LOC122328128
XM_043223840.1 mRNA downstream 396107 3727541 ~ 3729956 (+) True LOC122328130
XM_043223843.1 mRNA downstream 431721 3763155 ~ 3765161 (+) True LOC122328133
XM_043222943.1 mRNA downstream 433814 3765248 ~ 3766219 (+) True LOC122327521
XR_006247633.1 other upstream 25965 3297362 ~ 3304754 (+) True LOC122327325
TU220341 other upstream 94932 3229267 ~ 3235787 (+) False dnase1l4.2
TU220342 other upstream 94932 3229267 ~ 3235787 (+) False dnase1l4.2
TU220340 other upstream 94932 3231548 ~ 3235787 (+) False dnase1l4.2
TU220335 other upstream 106229 3223628 ~ 3224490 (+) False tma7
TU220429 other downstream 239659 3571093 ~ 3574473 (+) True G149028
TU220368 other downstream 259205 3590639 ~ 3592373 (+) False LOC122327325
TU220366 other downstream 261227 3592661 ~ 3595300 (+) True G148992
TU220657 other downstream 446146 3777580 ~ 3778183 (+) False LOC122328138
TU220637 other downstream 520629 3852063 ~ 3853371 (+) True G149157

Expression Profile