RNA id: XM_043222943.1



Basic Information


Item Value
RNA id XM_043222943.1
length 827
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122327521
representative True

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3765248 ~ 3766219 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CAGAAATTTGAAGAAATGAAGAGGAGAATCCATTCGTTAGAGACGTGGTTTCAGACACAAGaTTCAGGAACTAGAGAAGATGAACTGAGGATTGTACTCCTCGGAAAAACTGGGGTTGGGAAGAGTTCAACTGGAAACACCATCTTAGGAAGAGAAGCGTATATATCAGACCTTTCTGGAAGTTCTGTTACTAAAGTGTGTCAGAAAGAGACAGATGAAATCAACAGCAGACACATTACTGTGATTGATACTCCTGGACTTTTTGACACTGAACTCAGTAACGAAGAAATTCAGAGAGAAATCAGAAATTGCATCTCCATGATCCTGCCTGGACCACATGTGTTTCTCTTAATGATTCCTCTGGGAAGATTCACTCAAGAGGAAGAAAAAGCGGTAAAGATCATCCGAGACACGTTTGGAGAAAACTCATTAATGTACACCATAGTGCTGTTTACCAACGGAGACCAACTGAAGAACAAAAGCATCGAACAGTTCCTGGAAAACTCTGGGATTGCTCTTAAAAACCTCATTGCTGAGTGTGGAAACAGATACCATGTGTTCAATAATGAGAGCAAAGACCGGACACAGGTGAATGATCTACTGCAGAAGATAGATGAAATGGTGAAAGCAAACGGAGGGAGTTACTACTCATGCAAGATGTTCagagagatggaaagagaaatacaagagaaacaaaagaagatacTGACTGAGAAAGCGGAGAACCTgaacagagaaaaagaagaattgATGAAGAAACATAAAGAGTAGAAAAGAAAGTTGAAGACTAAGATGGAGGAAGAGcataacaaagagaaaaagagaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU220442 lncRNA upstream 162672 3602292 ~ 3602576 (+) True G149036
TU220441 lncRNA upstream 163116 3601741 ~ 3602132 (+) True G149035
TU220437 lncRNA upstream 163729 3600669 ~ 3601519 (+) True G149034
TU220435 lncRNA upstream 163729 3600731 ~ 3601519 (+) False G149034
TU220434 lncRNA upstream 166033 3598945 ~ 3599215 (+) True G149033
XR_006247690.1 lncRNA downstream 5353 3771572 ~ 3772554 (+) True LOC122327609
TU220641 lncRNA downstream 88664 3854883 ~ 3855624 (+) True G149160
TU220675 lncRNA downstream 112715 3878934 ~ 3880028 (+) True G149189
TU220688 lncRNA downstream 170255 3936474 ~ 3936925 (+) True G149201
TU220695 lncRNA downstream 195240 3961459 ~ 3987717 (+) True G149206
XM_043223843.1 mRNA upstream 87 3763155 ~ 3765161 (+) True LOC122328133
XM_043223840.1 mRNA upstream 35292 3727541 ~ 3729956 (+) True LOC122328130
XM_043223838.1 mRNA upstream 110583 3652070 ~ 3654665 (+) True LOC122328128
XM_043223024.1 mRNA upstream 398025 3366037 ~ 3367223 (+) True LOC122327571
XM_043222605.1 mRNA upstream 460494 3297362 ~ 3304754 (+) False LOC122327325
XM_043223845.1 mRNA downstream 11365 3777584 ~ 3779676 (+) True LOC122328138
XM_043223847.1 mRNA downstream 19078 3785297 ~ 3786625 (+) True LOC122328139
XM_043223848.1 mRNA downstream 23545 3789764 ~ 3792858 (+) True LOC122328140
XM_043222776.1 mRNA downstream 30537 3796756 ~ 3798921 (+) True LOC122327419
XM_043223849.1 mRNA downstream 44583 3810802 ~ 3813041 (+) True LOC122328141
TU220366 other upstream 169948 3592661 ~ 3595300 (+) True G148992
TU220369 other upstream 172875 3297373 ~ 3592373 (+) False LOC122327325
TU220657 other downstream 11361 3777580 ~ 3778183 (+) False LOC122328138
TU220637 other downstream 85844 3852063 ~ 3853371 (+) True G149157
TU220805 other downstream 471235 4237454 ~ 4238069 (+) False LOC122327447
XR_006247646.1 other downstream 946643 4712862 ~ 4715952 (+) True LOC122327517
TU221415 other downstream 1337310 5103529 ~ 5104436 (+) True G149646

Expression Profile