RNA id: XR_006247646.1


Basic Information

Item Value
RNA id XR_006247646.1
length 911
RNA type transcript
GC content 0.44
exon number 6
gene id LOC122327517
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4712862 ~ 4716003 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATACCACTAAACAACCGAAGGAAATGGTTCACGCttatgttttgttctgtttgtgcTGGCGGTGTTTAACTGGTGTGTTCGGTGAGTCGCTGTCGGTGACCGAGGGAGATTCCGTCACTTTACACACCGACGCTTCTCAGATACATCAAGATGAAGACATACTGTGGAAATTTGGAGCTCAAAAGTCTCTTATAGCTCAAAtcaagagagaaaaacaaatcttcCCCGATGTTAGATTCAGAGAAGGAGTGAAGCTGGATCATCAGaccggatctctgaccatcacgaGCGTCTCAACTAAACACACTGGACCCTACGAAGTAAAGATTAGTGGAGAAAAACGCTCAATAAAGAAATTCAGAGTTTCTGTCTATGCTCGTCTGCCCACTCCCAACATTACCAGAGATTCTTCACTGAATAGtttatcatcatcaccatcatcgaATTGTTCGTTGTTGTGTTCGGCGGAGAACGTGGGCCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaacatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaagCAGACCACACACCTCAATGTCACTCAGATCTGTCAAATTCACTCAGATCAGAGCCAGCTCTTGTTTTACGTTCTGCTGATTTCCGCTGCTGCTGGGTCTCTGTTGATTATGGCTACAGTTGCGATGTGCtgcaggaaataaaaaaaacgTTGACACCCAGGAAGAAAACAGAATGGCATTGTGTAAACCAACAAGAAAAACGAACTCAAAGATGGATATTGTCCATCAAAATTACCCCCAAAACACGAGTTCCAGATGAAACTACTGGAACTTAAACTGGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220964 lncRNA upstream 20493 4691000 ~ 4692369 (+) True G149367
TU220945 lncRNA upstream 37854 4635991 ~ 4675008 (+) True G149349
TU220951 lncRNA upstream 41626 4661793 ~ 4671236 (+) True G149355
XR_006247683.1 lncRNA upstream 49519 4661741 ~ 4663343 (+) True LOC122327603
TU220942 lncRNA upstream 62498 4633242 ~ 4650364 (+) True G149347
TU220982 lncRNA downstream 22105 4738057 ~ 4739303 (+) True G149383
TU220997 lncRNA downstream 27956 4743908 ~ 4765814 (+) True G149392
TU220996 lncRNA downstream 49989 4765941 ~ 4772281 (+) True G149391
TU221009 lncRNA downstream 57524 4773476 ~ 4777181 (+) False G149400
TU221010 lncRNA downstream 57524 4773476 ~ 4777181 (+) True G149400
XM_043222768.1 mRNA upstream 11999 4698192 ~ 4700863 (+) True LOC122327412
XM_043222784.1 mRNA upstream 23737 4685684 ~ 4689125 (+) True LOC122327427
XM_043222856.1 mRNA upstream 31110 4678808 ~ 4681752 (+) True LOC122327464
XM_043222857.1 mRNA upstream 31787 4678803 ~ 4681075 (+) False LOC122327464
XM_043222772.1 mRNA upstream 41740 4668745 ~ 4671122 (+) True LOC122327417
XM_043223027.1 mRNA downstream 5302 4721254 ~ 4723763 (+) True LOC122327573
XM_043222915.1 mRNA downstream 216492 4932444 ~ 4939804 (+) True LOC122327502
XM_043223868.1 mRNA downstream 280279 4996231 ~ 4998482 (+) True LOC122328161
XM_043223869.1 mRNA downstream 286783 5002735 ~ 5003675 (+) True LOC122328162
XM_043222914.1 mRNA downstream 323942 5039894 ~ 5042101 (+) True LOC122327500
TU220805 other upstream 474793 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 859491 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 934679 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 1117562 3592661 ~ 3595300 (+) True G148992
TU220368 other upstream 1120489 3590639 ~ 3592373 (+) False LOC122327325
TU221415 other downstream 387577 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 737213 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1018456 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 1087824 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 1131216 5847168 ~ 5848586 (+) False lsm7

Expression Profile