RNA id: XM_043222914.1


Basic Information

Item Value
RNA id XM_043222914.1
length 955
RNA type mRNA
GC content 0.53
exon number 8
gene id LOC122327500
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5039894 ~ 5042101 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtatatatatatatggatggcAGAAGTGTTTAGAGTGCAGAAAGTCCAGACAGACTGCAAACATGCTGAGGATCCTGTTGTTGAGCGTGCTGGCCGCCCTGGCGCTGGCTGAACCCAGATATCTGGAGGAGGGCCCTGAACAGAGGGTTGTTGGTGGAGAGGTGGCAAGACCCAACTCTTGGCCTTGGCAgATCTCTCTCCAGTACCTGTCTGGCGGCAGCTACTATCATACCTGTGGCGGCACTCTGATCAGAACTAACTGGGTGATGACTGCTGCCCACTGCGTTGACACCTCGAGGACTTGGCGTGTTGTCCTGGGCGACCACGACATCTACAACCACGAGGGTCGCGAGCAGTACATGAGCGTCAGCAACGTCTACATCCACCCCAACTGGAACAGCAACAATGTGGCCTCTGGATATGATATCGCCCTTCTGCGCCTGTCCTCCAGCGCCTCTCTGAACTCTTATGTACAGCTGGCCGCCCTGCCACCTTCTGGACAGGTTCTGCCCCACAACAACCCTTGTTACATCACTGGCTGGGGACGCACACAGACTGGTGGGTCACTCTCGGCTCAGCTGAAACAGGCCTATCTGCCTGTGGTGGACTACAGTACCTGCTCTCGTAGCGACTGGTGGGGAAGCACCGTGAAGAACACCATGGTTTGCGGTGGCGGCGGAAACGACTCTGGATGCCAGGGTGACTCTGGTGGCCCTCTGAACTGTCAGGTCAGTGGTCAGTATGTCGTCCATGGTGTAACCAGCTTTGTGTCTTCATCGGGTTGTAACGCCTACAAGAAGCCAACAGTCTTCACCCGTGTGTCTGCCTACTCCAGCTGGATTAGTGGCatcatTGGATAAGCAGGAAAACCTGAGAGGCTAAAGAGATAAACATCCTcaatttagcatgttttaagATCTGCATTggccaaaaatacaataaactttTCATCTGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01326 CELA1; pancreatic elastase I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221390 lncRNA upstream 40920 4992011 ~ 4998974 (+) False LOC122328161
TU221384 lncRNA upstream 57708 4944699 ~ 4982186 (+) True G149624
TU221358 lncRNA upstream 237817 4798640 ~ 4802077 (+) True G149615
TU221009 lncRNA upstream 262713 4773476 ~ 4777181 (+) False G149400
TU221409 lncRNA downstream 31892 5073993 ~ 5074628 (+) True G149641
TU221416 lncRNA downstream 63714 5105815 ~ 5107405 (+) False LOC122327529
TU221458 lncRNA downstream 160937 5203038 ~ 5204364 (+) False LOC122327380
TU221540 lncRNA downstream 394736 5436837 ~ 5438435 (+) True G149720
TU221542 lncRNA downstream 413472 5455573 ~ 5457344 (+) False LOC122327428
XM_043223869.1 mRNA upstream 36219 5002735 ~ 5003675 (+) True LOC122328162
XM_043223868.1 mRNA upstream 41412 4996231 ~ 4998482 (+) True LOC122328161
XM_043222915.1 mRNA upstream 100090 4932444 ~ 4939804 (+) True LOC122327502
XM_043223027.1 mRNA upstream 316131 4721254 ~ 4723763 (+) True LOC122327573
XM_043222938.1 mRNA upstream 323891 4712862 ~ 4716003 (+) False LOC122327517
XM_043223001.1 mRNA downstream 1803 5043904 ~ 5053204 (+) False LOC122327554
XM_043223000.1 mRNA downstream 1803 5043904 ~ 5053203 (+) True LOC122327554
XM_043223870.1 mRNA downstream 45333 5087434 ~ 5104957 (+) True LOC122328165
XM_043222956.1 mRNA downstream 61392 5103493 ~ 5107424 (+) True LOC122327529
XM_043222957.1 mRNA downstream 61392 5103493 ~ 5107424 (+) False LOC122327529
XR_006247646.1 other upstream 323942 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 801825 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1186523 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 1261711 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 1444594 3592661 ~ 3595300 (+) True G148992
TU221415 other downstream 61428 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 411064 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 692307 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 761675 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 805067 5847168 ~ 5848586 (+) False lsm7

Expression Profile