RNA id: XM_043223027.1


Basic Information

Item Value
RNA id XM_043223027.1
length 895
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC122327573
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4721254 ~ 4723763 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTATAAACCGTGAACAAAGAGTGCGTGACGCACAAGGGGCTCTATTGTGGGAGGATTCACACCACAAGAAGAGACGGAGAGTCTTCACCAAACAACCGAAGGAAATGGTTCGCGCttatgttttgttctgtttgtgcTGGCGGTGTTTAACTGGTGTGTTCGGTGAGTCGCTGTCGGTGACCGAGGGAGATTCCGTCACTTTACACACCGACGCTTCTCAGATACATCAAGATGAAGACATACTGTGGAAATTTGGAGCTCAAAAGTCAGTCATAGCTCAGAtcaagagagaggaagaaatcTTCCCCGATGTGAGATTCAGAGAAGGAGTGAAGCTGGATCATCAGaccggatctctgaccatcacgaGCGTCTCAACTAAACACACTGGACCCTACGAAGTAAAGATTAGTGGAGAAAAACGCTCAACAAAAGTATTCAGCGTTTCTGTCTATGCTCGTCTGCCCACTCCCAACATTACCAGAGATTCTTCACCGAATAGTTTATCGTCATCACCATCGTCATCTTGTTCGTTGTTGTGTTTGGCGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccagACACCTCAATGTCACTCAGATCTGTCAAATTCACTCAGATCGGAGCCTACCCTTGTTTTACGTTCTGCTGATTCCGCTGCTGCTGGATCTCTGTTGATTGCGGCTACAGTTGTGACGTGCTGCTTCTGCAAGACATGCGGAAAAACGATTGACACCCAGGAGGAAGGCAGAATGGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220964 lncRNA upstream 28885 4691000 ~ 4692369 (+) True G149367
TU220945 lncRNA upstream 46246 4635991 ~ 4675008 (+) True G149349
TU220982 lncRNA downstream 14294 4738057 ~ 4739303 (+) True G149383
TU220997 lncRNA downstream 20145 4743908 ~ 4765814 (+) True G149392
TU220996 lncRNA downstream 42178 4765941 ~ 4772281 (+) True G149391
TU221009 lncRNA downstream 49713 4773476 ~ 4777181 (+) False G149400
TU221010 lncRNA downstream 49713 4773476 ~ 4777181 (+) True G149400
XM_043222938.1 mRNA upstream 5251 4712862 ~ 4716003 (+) False LOC122327517
XM_043222939.1 mRNA upstream 5900 4712862 ~ 4715354 (+) False LOC122327517
XM_043222768.1 mRNA upstream 20391 4698192 ~ 4700863 (+) True LOC122327412
XM_043222784.1 mRNA upstream 32129 4685684 ~ 4689125 (+) True LOC122327427
XM_043222856.1 mRNA upstream 39502 4678808 ~ 4681752 (+) True LOC122327464
XM_043222915.1 mRNA downstream 208681 4932444 ~ 4939804 (+) True LOC122327502
XM_043223868.1 mRNA downstream 272468 4996231 ~ 4998482 (+) True LOC122328161
XM_043223869.1 mRNA downstream 278972 5002735 ~ 5003675 (+) True LOC122328162
XM_043222914.1 mRNA downstream 316131 5039894 ~ 5042101 (+) True LOC122327500
XM_043223001.1 mRNA downstream 320141 5043904 ~ 5053204 (+) False LOC122327554
XR_006247646.1 other upstream 5302 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 483185 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 867883 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 943071 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 1125954 3592661 ~ 3595300 (+) True G148992
TU221415 other downstream 379766 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 729402 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1010645 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 1080013 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 1123405 5847168 ~ 5848586 (+) False lsm7

Expression Profile