RNA id: TU220996


Basic Information

Item Value
RNA id TU220996
length 1592
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G149391
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4765941 ~ 4772281 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAGACCTGAAGatgactgctgctgctgttgctgatctgtagtttataaagtccagagtctgtggttctGGTGTCTGTGATGGTCAGAGTTCCAGTCATATTATTCACCTTAAGTCTGTTTCTGAATATCTCTGTATCATTAACACACTGAACATCTGTACTGTTCTGATCTCCAGTGGTGTCAGCAAAGCAAAAGCTATTAAAATACCATCTAATTTCTTCCTGTTGAATTGTTTCAATATCCATTATTGACAaagtgactgaatctccctctgTTACAGTCACTGGCACTTTTCCTGTTGTTCTGTTTTAACACCAGTTAGTAGTGTGACTGAATCTCCATTCTTCACTGACACTGGAACACCACCTGCACCAGACACTATTCAAGAAGTAAACAGTTAATTATAAGGCAAACGATCAGGAAAGTGTTGTGGAAACAAATGTAGAACTCGAGATATAACTTTGAAACAAAActaagttttaatttttgaggaagttttttttttcttctgtgcacCGCctgtccaaaaaacaaaaaagaaatcactGGACTACCATTAGCTTTGATGGCGTAGTAGACAGGCTTGTTAAAATACTGATCACAATAAAGGTGGTAAAAGATCTGACTTTTTTTAACTACTGTTTTAGTAGGGCATGTATACTTTTTCTATTCACTGTACTACATCAAAGATGGAGATAATTAGcatcataaattaattttactcaCCAGCAGAAACACTGAAGCTCCTAATGATGCTGAACCTGCTGTTGCTGATCTGTAGTTTATATTCTCCAGAGTCTTCTGTTCCAATGttcgtgatggtcagagatcctgTCCGATCGAGCTCCAGTCTGTCTTTGAATCTCTCATCAGCATCACAATGAACATCCGTACAGATTTTACTTTGATCTCCAGGGATTCCAGCAATGGGAGTGTCATTAAAATACCATGTTATCAAAGTATTTGGGTTGTTTGTTAAACGACTGTATAAAGTGACAGATTCTCTCTCCATAACTGACTTTTTCTTAATTTCATCTTGTTCAGCAGCagaaacacctgaaacacaaacagctactgtaaagctgctttgacacaacaTTGTATAaagcactgtataaataaaggtaACTTGACTTTTActgcaaagggaaaaaaaagataagttaCACTACATGAAATAACTGGTGACGGTGAAAAAATATGTTAGTTCACATTATGAACACATTTAACATTCGATTAACCCCAATTCTCTTTGCCTTTGGTTAAAGAACTAAATGCCAACAGGGACGGATCAAACTATTTAAAGCAGATGACGAGAAGCTTATGTGTTTATAGAATAGTTTATAGAGTCCAGTGTGCCGAGTTGTGATATTCGTGATGGTCAAAGATCCAGTCTGatgatccagcttcagtctgtctctgaatcgtTCATTAACAAAATGACTACCCTGACCAACTAAACACATCTCATTGCGATTTAAGATTGAATTGTTACTCAAACACCATCTCATGTGtcttttttgtttcctttgagCACCAGTGTGTAGAGTGAGtgaatctccctccatcactgacACCCTCGCTGAATCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220997 lncRNA upstream 127 4743908 ~ 4765814 (+) True G149392
TU220982 lncRNA upstream 26638 4738057 ~ 4739303 (+) True G149383
TU220969 lncRNA upstream 35241 4698441 ~ 4730700 (+) False LOC122327412
TU220964 lncRNA upstream 73572 4691000 ~ 4692369 (+) True G149367
TU220951 lncRNA upstream 94705 4661793 ~ 4671236 (+) True G149355
TU221009 lncRNA downstream 1195 4773476 ~ 4777181 (+) False G149400
TU221010 lncRNA downstream 1195 4773476 ~ 4777181 (+) True G149400
TU221358 lncRNA downstream 26359 4798640 ~ 4802077 (+) True G149615
TU221384 lncRNA downstream 172418 4944699 ~ 4982186 (+) True G149624
TU221389 lncRNA downstream 201453 4973734 ~ 5070000 (+) True G149627
XM_043223027.1 mRNA upstream 42178 4721254 ~ 4723763 (+) True LOC122327573
XM_043222938.1 mRNA upstream 49938 4712862 ~ 4716003 (+) False LOC122327517
XM_043222939.1 mRNA upstream 50587 4712862 ~ 4715354 (+) False LOC122327517
XM_043222768.1 mRNA upstream 65078 4698192 ~ 4700863 (+) True LOC122327412
XM_043222784.1 mRNA upstream 76816 4685684 ~ 4689125 (+) True LOC122327427
XM_043222915.1 mRNA downstream 160163 4932444 ~ 4939804 (+) True LOC122327502
XM_043223868.1 mRNA downstream 223950 4996231 ~ 4998482 (+) True LOC122328161
XM_043223869.1 mRNA downstream 230454 5002735 ~ 5003675 (+) True LOC122328162
XM_043222914.1 mRNA downstream 267613 5039894 ~ 5042101 (+) True LOC122327500
XM_043223001.1 mRNA downstream 271623 5043904 ~ 5053204 (+) False LOC122327554
XR_006247646.1 other upstream 49989 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 527872 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 912570 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 987758 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 1170641 3592661 ~ 3595300 (+) True G148992
TU221415 other downstream 331248 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 680884 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 962127 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 1031495 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 1074887 5847168 ~ 5848586 (+) False lsm7

Expression Profile