RNA id: TU220997


Basic Information

Item Value
RNA id TU220997
length 320
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G149392
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4743908 ~ 4765814 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGTGACATTAACAATGAAGCTCTTCATGATGCTGAATCTTTTGCTGATGATCTGTAGTTTATAATctccagagtctgtggttctggtgttcatgatggtcagagatagAGTCTGATCGAGTTTCAGCCTGTTTCTGAATCTCTCAGTGCCATTATTACACTGAACATCTGTACAGTTAAAACTAAGATCTCCACTGATTTCGGCAATAGGAATGCCGTCAAAAATCCATTTCATCAAATAATTTGTGGCATTCACTACACCAGGATCTAAAATAAAAGAGTCTCCCTCCTTCACTGACTTCGTTTTGTCTTGTTGAGAA

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220982 lncRNA upstream 4605 4738057 ~ 4739303 (+) True G149383
TU220969 lncRNA upstream 13208 4698441 ~ 4730700 (+) False LOC122327412
TU220964 lncRNA upstream 51539 4691000 ~ 4692369 (+) True G149367
TU220951 lncRNA upstream 72672 4661793 ~ 4671236 (+) True G149355
XR_006247683.1 lncRNA upstream 80565 4661741 ~ 4663343 (+) True LOC122327603
TU220996 lncRNA downstream 127 4765941 ~ 4772281 (+) True G149391
TU221009 lncRNA downstream 7662 4773476 ~ 4777181 (+) False G149400
TU221010 lncRNA downstream 7662 4773476 ~ 4777181 (+) True G149400
TU221358 lncRNA downstream 32826 4798640 ~ 4802077 (+) True G149615
TU221384 lncRNA downstream 178885 4944699 ~ 4982186 (+) True G149624
XM_043223027.1 mRNA upstream 20145 4721254 ~ 4723763 (+) True LOC122327573
XM_043222938.1 mRNA upstream 27905 4712862 ~ 4716003 (+) False LOC122327517
XM_043222939.1 mRNA upstream 28554 4712862 ~ 4715354 (+) False LOC122327517
XM_043222768.1 mRNA upstream 43045 4698192 ~ 4700863 (+) True LOC122327412
XM_043222784.1 mRNA upstream 54783 4685684 ~ 4689125 (+) True LOC122327427
XM_043222915.1 mRNA downstream 166630 4932444 ~ 4939804 (+) True LOC122327502
XM_043223868.1 mRNA downstream 230417 4996231 ~ 4998482 (+) True LOC122328161
XM_043223869.1 mRNA downstream 236921 5002735 ~ 5003675 (+) True LOC122328162
XM_043222914.1 mRNA downstream 274080 5039894 ~ 5042101 (+) True LOC122327500
XM_043223001.1 mRNA downstream 278090 5043904 ~ 5053204 (+) False LOC122327554
XR_006247646.1 other upstream 27956 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 505839 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 890537 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 965725 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 1148608 3592661 ~ 3595300 (+) True G148992
TU221415 other downstream 337715 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 687351 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 968594 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 1037962 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 1081354 5847168 ~ 5848586 (+) False lsm7

Expression Profile