RNA id: TU221722


Basic Information

Item Value
RNA id TU221722
length 902
RNA type TUCP
GC content 0.44
exon number 4
gene id lsm7
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5847131 ~ 5848586 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGGGGCGTGCAGGAGTTTTGAACATGGCGgataaagagaagaaaaagaaggagaGCATTTTTGATTTGTCGAAATATATCGACAAACATATAAGAGTGAAGTTCCAAGGCGGACGTGAAGCAAGCGGGGTCTTAAAAGGTTTCGACCCGCTGTTGAATCTCGTGTTGGATGGCACCATTGAATACATGCGAGATCCTGATGATCAGTATAAACTGACTGAAGACACCAGGCAGCTCGGTTTGGTCGTATGTCGAGGGACGTCCGTCGTActgatctgtccacaggacgGGATGGAGGCCATTCCCAACCCTTTCATTCAACAGCAAGACGGATAATATTcgtctgctttttttttttttttctttcttgcatTGTGTAGATGTCCTGTGAAGAAAATAGATGGTTTTCGTTCGctctgaaataatgaaaaaatacattttgtatttagacTCAGGATAAATGTGTTTGGTTGGGTTTTCCGTGCTTATTACGGTTTGAATTATAAGGCAtgttttctgttcatgaaaaaaaaaatgagtgcgTGATGCTGCCCGAGTTctttcagtgttgttttattcGTTCGGACGTTAATAAAACACCCGGGATGGACACGTTTTTCTAAATCGAGCAAAAACAACGATTATGCCTGCACCTCGAAGGGCGGATCCCGCGGGATTacgcttgcacacacacacacacacacacacacacacacacacgcgcggtTGAACTTTTGGCAAGCTCGCAGTCAACGTCTTTGCAATGGAAACTGTATTTTGCAGGTCTTCGGTTCCGTGACGCCTtgggaaaacatttttgtttgcctTTGTGGTGTTGTCCCCTCTGTTTTACACTCGCAAACCTAATTCGTAGGATTAAACGCTCCGTTTTGGACCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221714 lncRNA upstream 23066 5822984 ~ 5824102 (+) False hyal2b
TU221702 lncRNA upstream 74126 5772335 ~ 5773042 (+) False rad54l2
TU221684 lncRNA upstream 84006 5758011 ~ 5763162 (+) True G149811
TU221682 lncRNA upstream 93355 5753494 ~ 5753813 (+) False G149810
TU221683 lncRNA upstream 93450 5753179 ~ 5753718 (+) True G149810
TU221724 lncRNA downstream 406 5848992 ~ 5849918 (+) True G149829
TU221732 lncRNA downstream 34378 5882964 ~ 5885190 (+) True G149834
TU221752 lncRNA downstream 56247 5904833 ~ 5913295 (+) True G149846
TU221748 lncRNA downstream 75321 5923907 ~ 6012681 (+) True LOC122327524
TU221790 lncRNA downstream 146287 5994873 ~ 5997676 (+) True G149874
XM_043222666.1 mRNA upstream 7520 5831270 ~ 5839648 (+) True mfsd14a1
XM_043222667.1 mRNA upstream 7520 5831270 ~ 5839648 (+) False mfsd14a1
XM_043222898.1 mRNA upstream 16834 5825104 ~ 5830334 (+) True abhd14a
XM_043222671.1 mRNA upstream 23250 5810478 ~ 5823918 (+) True hyal2b
XM_043222670.1 mRNA upstream 23250 5812021 ~ 5823918 (+) False hyal2b
XM_043222591.1 mRNA downstream 2729 5851315 ~ 5859224 (+) True tmprss9
XM_043222592.1 mRNA downstream 3481 5852067 ~ 5859224 (+) False tmprss9
XM_043222620.1 mRNA downstream 14294 5862880 ~ 5872295 (+) True enc3
XM_043223017.1 mRNA downstream 145802 5994388 ~ 6002630 (+) False LOC122327565
XM_043223016.1 mRNA downstream 152671 6001257 ~ 6002630 (+) True LOC122327565
TU221709 other upstream 40545 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 104530 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 391741 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 742732 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1131216 4712862 ~ 4715952 (+) True LOC122327517
TU221826 other downstream 343061 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 389701 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 654328 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 859902 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 2318863 8167449 ~ 8168272 (+) True G150756

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU185612 True 30 TUCP 0.38 1 CI01000030 7737975 ~ 7738004 (-)