RNA id: TU221790


Basic Information

Item Value
RNA id TU221790
length 739
lncRNA type intronic
GC content 0.40
exon number 4
gene id G149874
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5994873 ~ 5997676 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGATGAAAAATACCGTGAGAAATATTCAGAAGGAGGCAGAAGCCGCTTAGTAATCAATAACGTCAGTGAAGATGATTTGGGAATTTATTACTGTATAAAACCAGGCTTTTCTCTGAAGATCAGCGACGGCATCAGACTGCACACCGCTGAATCTCCTCACGATGAACCAGAGCCAAAAAATCCAGGTCAAGATCGTACATCTCTTCAGATTTCCGTCGTCCTGATCAGCCTGTTGACTGTTGGGCTCTTTGCTGCGGTTATAGGCTTATTAATGATGAACCACAAACTGTCTAAGGAAGGTCCCAAATATGCCAATGCTCATCAGATTTCTACTATGAAGTTTCTTGAGAGTaacagaggaaaaacaaatcATGACTATCTAGAGGTGCTGCCAAATATCTAGAGGAAACAAACAGTGTTGATCTATTGCCGTTTTCAGAAGTCCGCGCCGCTTGAACATGAAATTATTCACgtatttaaatgactaaattgtGTCTGCAATGAAGATGTCCATCGGGTTTTATCAACGAGGTTTgcttttagaataaataaacttagtATTGTTTCTCTTTCATGTCTCATTTCACAATTTATGGACTGGAGTGGCGTggattatgcattatttttatcagCCGCATTTATACAGCCTGATAGAAATATATTTCGTTACGTAATCGGAGTAAAACATTGCTAGCTCGACTAGCTCGATGTATGAAATGCGAAAACGCTCTTTTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221752 lncRNA upstream 81578 5904833 ~ 5913295 (+) True G149846
TU221732 lncRNA upstream 109683 5882964 ~ 5885190 (+) True G149834
TU221724 lncRNA upstream 144955 5848992 ~ 5849918 (+) True G149829
TU221723 lncRNA upstream 146287 5847168 ~ 5848586 (+) True lsm7
TU221714 lncRNA upstream 170771 5822984 ~ 5824102 (+) False hyal2b
XR_006247684.1 lncRNA downstream 100196 6097872 ~ 6098526 (+) True LOC122327604
XR_006247681.1 lncRNA downstream 117373 6115049 ~ 6160723 (+) True LOC122327601
TU221805 lncRNA downstream 117498 6115174 ~ 6143818 (+) False LOC122327601
TU221816 lncRNA downstream 188293 6185969 ~ 6187870 (+) True G149891
TU221817 lncRNA downstream 191441 6189117 ~ 6191390 (+) True G149892
XM_043222620.1 mRNA upstream 122578 5862880 ~ 5872295 (+) True enc3
XM_043222591.1 mRNA upstream 135649 5851315 ~ 5859224 (+) True tmprss9
XM_043222592.1 mRNA upstream 135649 5852067 ~ 5859224 (+) False tmprss9
XM_043223023.1 mRNA upstream 146577 5847131 ~ 5848296 (+) False lsm7
XM_043222667.1 mRNA upstream 155225 5831270 ~ 5839648 (+) False mfsd14a1
XM_043223016.1 mRNA downstream 3581 6001257 ~ 6002630 (+) True LOC122327565
XM_043222967.1 mRNA downstream 8806 6006482 ~ 6008186 (+) True LOC122327535
XM_043222947.1 mRNA downstream 11806 6009482 ~ 6011556 (+) False LOC122327524
XM_043222542.1 mRNA downstream 24330 6022006 ~ 6069920 (+) True bcor
XM_043222650.1 mRNA downstream 233596 6231272 ~ 6235360 (+) True sgsh
TU221722 other upstream 146287 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 188250 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 252235 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 539446 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 890437 5103529 ~ 5104436 (+) True G149646
TU221826 other downstream 193971 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 240611 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 505238 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 710812 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 2169773 8167449 ~ 8168272 (+) True G150756

Expression Profile