RNA id: XM_043222650.1


Basic Information

Item Value
RNA id XM_043222650.1
length 1737
RNA type mRNA
GC content 0.55
exon number 8
gene id sgsh
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6231272 ~ 6235360 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCTCGCGGAGTGTCAACAAAGTCGAGGCTTTTTCGCGTCGCTTCAGTGACATTCCTGGGCACAGATGACACCAAGATGCCGCTTCTGCTCGCCTGGGCTTCGTtgtgttttctgctttgttGTAATGTAGGAGAGTGCAGAAGGAGAAATGTGCTTCTCATAATCGCTGATGATGGCGGGTTCGAAACAGATGTCTACAACAACACCGTGGTCCAGACCCCTCATCTCCGGGCTCTTTCTGAGCGCAGCGTGATCTTCAGGAACGCCTTCACCTCCGTCAGCAGCTGCTCACCGAGTCGCTCCACCATCCTGACTGGACTACCGCAGCACCAGAATGGGATGTACGGCCTCCACCAGGGAGTTCATCACTTTAACTCGTTTGATGGAGTGCAGAGTCTTCCTCTTATCCTGAAACAAGCCAACATTCGCACAGgtATCATCGGGAAAAAGCACGTCGGTCCGGGCCCCGTATACCCGTTTGATTTCGCCCACACCGAAGAGAccgattccgttctgcaggtgGGTCGGAATATCACCAAGATCAAGCTCCTTGTCCGGAAGTTCTTCCAGagccagaaagagcagaggagcGAGACGGGAGACGAGCGTCCGTTCTTCCTCTACGTGGCGTTCCATGATCCTCACCGTTGCGGCCATTCCCAGCCTCAATATGGAATGTTCTGCGAAAAGTTCGGGAACGGAGAGAGCGGAATGGGGAGAATCCCGGATTGGCAGCCGAAGTATTACTCTCCAGACCAGGTCGAGGTTCCGTACTTTGTTCCGGACACTCCTGCAGCGAGGGCGGACATCGCGGCTCAATACACAACGGTCGGCCGGCTGGACCAAGGTGTCGGGCTGGTTCTCCGAGAGCTGCGGGACGCGGGGTATGAAAATGACACTCTGGTGATCTACAGCTCGGATAACGGGATTCCGTTTCCCAACGGTCGCACAAACTTGTACGGCTCAGGCGTGAAGGAACCCATGCTGGTCTCCTCGCCTGAACACCAGCGGCGCTGGGGGAAGGTTAGCCAGGCCTACGTCAGTCTGCTGGACATCACTCCCACCATCCTGGACTGGTTTTCTTTGCGGTACCCATCGTACAGTCTCTCACGGGCTGGCCCGGTGGTGCTGACTGGTCGGTCTCTTCTCCCGGCCCTGATCTCAGAACCGTCCTGGCTCACCGTCTATGCCAGCCAGAGTCTCCACGAGGTCACCATGTTCTACCCCATGCGCTCCATCCACCGGGGCCGCTACCGCCTCCTGCACAACATGCACTACCGCATGCCCTTCCCTATAGACCAGGACTTCTACGTGTCCCCGACCTTCCAGGATCTGCTGAACAGGACGCGCGCGGGTCGGCCCACGGGCTGGTTTAAGACTCTGAAGGAGTATTACTACCGGGAGAGGTGGGAGCTGTTTGACATCCAGTCAGATCCGACGGAGACGCGGAACCTGGCTGCCGATCCGGCCCACGCGCTTCTGGAGAGCCTGAGGGATCGGCTGCTGAAGTGGCAGTGGCAGACGGAGGATCCGTGGGTGTGTGAGCCGGATGCCGTCCTTGAGACCAAGCTGGAACCGCAGTGCCGACCACTGTACAATGAACTATGAGCGCCTGaaatctgagagagagaaagagaaagctgTGTAAACCTTTTACACTTCAGGTTCAccgttttaatattatatttgtagtttttatactgaaaatgttaataaacatgtttaaataacaaaaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01565 SGSH; N-sulfoglucosamine sulfohydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221851 lncRNA upstream 7489 6223257 ~ 6223783 (+) True G149913
TU221817 lncRNA upstream 39882 6189117 ~ 6191390 (+) True G149892
TU221818 lncRNA upstream 39882 6189117 ~ 6191390 (+) False G149892
TU221816 lncRNA upstream 43402 6185969 ~ 6187870 (+) True G149891
XR_006247681.1 lncRNA upstream 70549 6115049 ~ 6160723 (+) True LOC122327601
TU221900 lncRNA downstream 83625 6318985 ~ 6319341 (+) True G149948
TU221901 lncRNA downstream 84445 6319805 ~ 6320041 (+) True G149949
TU222436 lncRNA downstream 112058 6347418 ~ 6349670 (+) True G150294
TU222438 lncRNA downstream 117402 6352762 ~ 6353668 (+) True G150296
TU222443 lncRNA downstream 128245 6363605 ~ 6365101 (+) True G150300
XM_043222542.1 mRNA upstream 161352 6022006 ~ 6069920 (+) True bcor
XM_043222947.1 mRNA upstream 219716 6009482 ~ 6011556 (+) False LOC122327524
XM_043222967.1 mRNA upstream 223086 6006482 ~ 6008186 (+) True LOC122327535
XM_043223017.1 mRNA upstream 228642 5994388 ~ 6002630 (+) False LOC122327565
XM_043223016.1 mRNA upstream 228642 6001257 ~ 6002630 (+) True LOC122327565
XM_043223004.1 mRNA downstream 757 6236117 ~ 6238292 (+) True npb
XM_043222885.1 mRNA downstream 75309 6310669 ~ 6312558 (+) False LOC122327484
XM_043222884.1 mRNA downstream 75339 6310699 ~ 6312558 (+) True LOC122327484
XM_043222886.1 mRNA downstream 75339 6310699 ~ 6312558 (+) False LOC122327484
XM_043222881.1 mRNA downstream 79524 6314884 ~ 6316296 (+) True LOC122327481
TU221826 other upstream 38613 6191647 ~ 6192659 (+) True G149895
TU221722 other upstream 382686 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 424649 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 488634 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 775845 5453165 ~ 5455427 (+) False LOC122327428
TU221839 other downstream 2927 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 267554 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 473128 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 1932089 8167449 ~ 8168272 (+) True G150756
TU223279 other downstream 2378929 8614289 ~ 8617605 (+) True G150862

Expression Profile