LOC122327524


Basic Information

Item Value
gene id LOC122327524
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5923907 ~ 6012681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU221748
ttcccaatatttttttttttaattcataaatttcATATAAACAGTTAACTGTTGAATAATTTACACACAGCAAGATTCATTTTCATTCCATTCCAACATTTACTGTACACGTCACTGCTTGGCTTTCCTTGgaaaaactgaactaaaactgTATTGGTACGAGTTAATCATGGCACAGTTTGATCCTGGTCTGATGGAGCTGTCGCTTTAAATGCGTGACGGCGGTTTCCGCACGCAGTGAAAATGGCGTCGGGgcttaaataacattttctacaATAAAGGTGAACGATGGGACAGAAAAACAACTGGGGGTCGTCTATGTGCACAGAggaaaagcaaaacagaaaacgAACAAAACATAAggataaacaaaacaaacagaacgaTCAAAACGttcaactaaacaaaaatgtacaggaCAACAGTTGGGGGCATCcatcgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataacatttaacacattcgttattttaaaaaaatgatatttaattgaTGCTGTATCTGGGGCTGACATGATGCTTTTTAACCAAACTTACGGAAGATCATTTCCGCTTTAAAACGACAAAAAAACtcgtggggaaaaaaaagtgagaataTTCAgaattgtggatttttttttctaggaatTCCAAGATTCTCGgaatttttacttttctctGTGAACACGTTTTGGAATTCGTCCCGATTCTAAttcccccccacacacacattctaTATTAAATTTCTACGAATCGCcagtttaaaaaggtttttgtgtgtCTCCTTACAACCGCCGACTACGCATCGTACAATTCAGAATGGTTTatgtttatatctttttttttaaaaaaaaaaaaaaacttttaaacctTTATCTCGTGGCGGAAACGAGCTTCCACGGTAACCTGTCCGGGCAGGCTCTCGATCATTTTCTGCGTGATTGTAGCTTATAATAAAAGTCTGCAGTGGTCTTTTCCGGTTTTTCACATTGAAAAACAATTGTTTATTCAAAACAGTCACCTTTATGAACGTAGAGGAATTGTCCGTAttgtacaaagaaaaaaagggtaacaatttacaaaatacaaaatgctgACAAAAGGATATGCAATCATTTCTTGGATGGCAAACAAGTAGTTgtacatgaaaagaaaaaaacaaaaccccaaaacaatGCAAAgtcgtacaaaaaaaaaaaaaaaaaaacgtttggaGAGTGAAATCGATGTCGTTTATATCTCTGAATCACAGTGTAATGCCGTGAGCAAAAGACATCACACTTTTACCGAAAAAAGAAATCTATATACAACGATAATGTTAATTCCGTAATGTACACGAATAGTAAAAGTTTACAGTCAAAAAAGTAATTGAATTCGCCCTCCCTATTGTGactaaaaaaatagaaattaatatcTCTAAGTGTAatactttttccttttaaaaacaataaaatacatacaacgCCTTGCGCCGCTCGACCTCTTCTGCTTCTCTAGCTTGCTGCAGAAAAACCGCATTCGGGTTTTGTTACTTAAGgtcatttatcaaaaaaattacatcctctcgatttttttttttttttttttGTTGAATAcagtgcaattatttatttatttatttttcagaaaagtaACACTGTTTTCCTCAGCAAAGTGTGGCGACATGCACTTGTGACTCATCAAGAaattaaaacttgttttaagAGAcggatggatttttttttttaattcggtTACACATTACAACACAATAACATCTACACACAACCGAGGCCGTAACCGCTATAGACACTGTTAGGGTGAGGATATTACATATCTGCACCATTATAGCTTTTAATTACGTTTTAAGTTACGTTTTTTCTTGTTCTTGGCGTTCAACCGCCCTCGTCGAAATACCCGCTGACTATtggccaatcaaatcaaagtggGCGGGGTTTAGTCTTTCCAGAGGTAAAAGACGTCAAGCTAAGATGAAACTAGCAAAACATTCAATACTTAACAGCCgtttatgatataaatattacactGCTGACAGCGATGCAAACTAAGACTTTTCCCCTTCAAATATGACCGTTTGGTATCATTTAAGTCGACCTGAAGGGACAAGAAAGTTTTTGCTATATTAGTCACACTAATATATTACACAGCTGTCTTAGTTTTATTTAGCTGTCGTCACTGTTTTACTTCGATATCGCCTTTATAATAAACGGTTTAATAAACGGTCACGGCCTGTGAGTTACACAACAAACATCCACACTTCAACGCCATACTTTCTACTATATAATTCTATTCAATGAATATCCCATTTAATTACACAAAATGTACACGGAATGGAGCGATTACACCACATCCAGTATCCgggaggaaaaaaacagcacaacgAACAATAAATAGAGTGAAATTTCGATTCTTTACATCCTAACATCGGGCGTTCCTCTTCGGTAGATTCACAAATCTACAAGATACAGCAATTAAAGATCGCAAAAACAATCGTGTTTCTCCATCTATCGACGGGCATCAATAAATAATCTGCGTTTGATTGCGCCCGTAAAGGCGAAGCGTTTGTACAAGTGGTGCGcgaacatcaaaaataaaaacaaactggaATGCACAACACAAAAGAGGAACGGGTGCGAGGGGCGGGTCATCAGTCCATCCGGATCTTCTGATTGGTCATCCTGTAGATGATGCTGTCGTACCCGGGATCCATGTTCCAGAGGTTGTACGAGATCACGACGACGGATAAAGCCAGCACGATCATCAGCCACAGGACAATGTTAAAGACCACGGCGTAATCGTAGTCGTACTTGTAGGCCAGGTTGTAGAGGCTGC
>XM_043222947.1
TAGCACTTCCTCCCTGACTCTCAGTTAAGCTAACCATCTTACTGCATACGAGCAAAGCGACCACAGAATGAGGACAGCGCAACTTTTGCTCTTCTGTCTGCTGGTGTGTCACACTATGGAGAGTTTGACCGATAAACGGGTGAATTTAGGGGGAAACATTACTTTAGACTGTCCTCTTGATGTGAAAGAAATTTACTGGCTCTTCCAGAGACCCACAGACTCTCCGGTGATCATACTGAGAACTTTCTCATCAGAATTTACATCATCTTTTATAAAAGACCAAAGACTGAAAGACAAATACTCATCACTGACTTTAAGCCGTTTATTTATTCGAAACCTGACTATTAATGAATTAGGAATATATTATTGtgcaaaaccaaaccaaacactACAGATCAGCGACGGCACCAGACTTCACAGCACTGAATCCCCCCAAGAtcaaaagcaaacagaaaacaaagacCAGGAACAACAATACGAGACAGCGTTTGAGTTTCACAAGATTTTGACCGTCGCGTCCATCCTACTGAACTTTGCGCTGATTATTGCAATAATAGGTCTGTTTATTCCTAAACTTAAGAAGTCGAGACAAAGTCGACAGCGGCTCCAGAACGTCCCATTAGAGCAGATCGAGGACTTAAACAACGCACAGTATTCTGAAATCGAGTTGCCCACATATTCGAGAAGGGAAAATCCCGTTCAGATGAGCAGCACTTACGTCCTTCTCCAGAAGCCGACGCTGCATCCCGGATCGACGCGAGCGGAAATCAATGCATCTCGCATCTTGCAAAGTTCTTCAATAGTCTGATATCTCTTGTGGATGTATCCTTTTCGGTATAGGATCAGTCTTTATAAAGGTCAATGTGTGGTTCTGTCGCTGTTTGAATACAACCACGTCATTtacttaaatttataaaatactaaattttGGATGCGTGCTATACCTCATGTCCATCTTGATAGATGTTGGTAGAGTTTAAAAGGTTCAATGCATTGCcgttaaattacagtaaacaaCGTTTATTAATCCCGGCTAATGCTAATGTGTGTTAAACACAACtagtttattattaagtatgttatttgtttgattttattgattGCAATTAATAAAGTAGatcagaaaaacactttttactaGTGGTAGGTCCCTAACAAAAGGGCAGAAACGCTATTCATGAGACAGATTTGAACAAAGCACAAGATGACGGTCTAGAGATGAGCTGTCTGTTGTGCAACACTGACTGGAGTTTTGTTATGCTTATCATGAACTGGTAAAATGTTCTACTTCCTGTTTCTGctagaagaaaaaacaacaacaaaaacaaacggCAGTGAAATGTCCGCATTAAAGTTTTAAACTAGTAAAAAGCAATGCCTAGGGTTCAATATCGTTGAATAcagtgcaattatttatttatttatttttcagaaaagtaACACTGTTTTCCTCAGCAAAGTGTGGCGACATGCACTTGTGACTCATCAAGAaattaaaacttgttttaagAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221748 True 2882 lncRNA 0.36 2 5923907 6012681
XM_043222947.1 False 1513 mRNA 0.39 5 6009482 6011556

Neighbor

gene id symbol gene type direction distance location
enc3 enc3,LOC107731329,LOC107593050,LOC107695631,LOC107586932,LOC107755983,LOC103464111,LOC103138520 coding upstream 51612 5862880 ~ 5872295 (+)
tmprss9 tmprss9,LOC107695615,LOC107704409,LOC107731339,LOC107593090,LOC107586983 coding upstream 64683 5851315 ~ 5859224 (+)
mfsd14a1 mfsd14a,hiat1b,LOC107695628,LOC107704433,LOC107731334,LOC107756019 coding upstream 84259 5831270 ~ 5839648 (+)
abhd14a LOC107756017,LOC107586929,LOC107695627,LOC107704435,LOC107593054,LOC107731335 coding upstream 93573 5825104 ~ 5830334 (+)
rassf1 rassf1,LOC107756015,LOC107695625,LOC107704437,LOC107586927,LOC107731340 coding upstream 120945 5794921 ~ 5802962 (+)
bcor bcor,LOC107756025,LOC107745971,LOC107593046 coding downstream 9325 6022006 ~ 6069920 (+)
sgsh sgsh,sphm,LOC107756031,LOC107704414 coding downstream 218591 6231272 ~ 6235360 (+)
LOC122327484 NA coding downstream 297988 6310669 ~ 6312558 (+)
LOC122327481 NA coding downstream 302203 6314884 ~ 6316296 (+)
LOC122328229 krt97,krt96,LOC107663680,LOC107745983,LOC107739339,LOC107593038 coding downstream 331440 6344121 ~ 6347334 (+)
G149846 NA non-coding upstream 10612 5904833 ~ 5913295 (+)
G149834 NA non-coding upstream 38717 5882964 ~ 5885190 (+)
G149829 NA non-coding upstream 73989 5848992 ~ 5849918 (+)
G149811 NA non-coding upstream 160745 5758011 ~ 5763162 (+)
G149810 NA non-coding upstream 170094 5753179 ~ 5753813 (+)
LOC122327604 NA non-coding downstream 85191 6097872 ~ 6098526 (+)
LOC122327601 NA non-coding downstream 102368 6115049 ~ 6160723 (+)
G149891 mid1ip1b,LOC107756028,LOC107663600,LOC107704421,LOC107593044,LOC107745972,LOC107586944 non-coding downstream 173288 6185969 ~ 6187870 (+)
G149892 NA non-coding downstream 176436 6189117 ~ 6191390 (+)
G149913 NA non-coding downstream 210576 6223257 ~ 6223783 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other upstream 75321 5847131 ~ 5848586 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other upstream 99805 5810478 ~ 5824102 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other upstream 117284 5803726 ~ 5806623 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other upstream 134517 5772335 ~ 5789390 (+)
LOC122327321 NA other upstream 178856 5734408 ~ 5745051 (+)
G149895 NA other downstream 178966 6191647 ~ 6192659 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other downstream 223436 6236117 ~ 6239357 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other downstream 490233 6502914 ~ 6510456 (+)
G150369 NA other downstream 695807 6708488 ~ 6708891 (+)
G150756 NA other downstream 2154768 8167449 ~ 8168272 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G163181 NA non-coding CI01000030 null 7649830 ~ 7651885 (-)
tiger barb (Puntius tetrazona) G88543 NA non-coding NC_056710.1 CM032079.1 15515271 ~ 15778531 (+)