lsm7 (lsm7,LOC107593053,LOC107704434)


Basic Information

Item Value
gene id lsm7
gene name lsm7,LOC107593053,LOC107704434
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5847131 ~ 5848586 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU221722
GGGCGGGGCGTGCAGGAGTTTTGAACATGGCGgataaagagaagaaaaagaaggagaGCATTTTTGATTTGTCGAAATATATCGACAAACATATAAGAGTGAAGTTCCAAGGCGGACGTGAAGCAAGCGGGGTCTTAAAAGGTTTCGACCCGCTGTTGAATCTCGTGTTGGATGGCACCATTGAATACATGCGAGATCCTGATGATCAGTATAAACTGACTGAAGACACCAGGCAGCTCGGTTTGGTCGTATGTCGAGGGACGTCCGTCGTActgatctgtccacaggacgGGATGGAGGCCATTCCCAACCCTTTCATTCAACAGCAAGACGGATAATATTcgtctgctttttttttttttttctttcttgcatTGTGTAGATGTCCTGTGAAGAAAATAGATGGTTTTCGTTCGctctgaaataatgaaaaaatacattttgtatttagacTCAGGATAAATGTGTTTGGTTGGGTTTTCCGTGCTTATTACGGTTTGAATTATAAGGCAtgttttctgttcatgaaaaaaaaaatgagtgcgTGATGCTGCCCGAGTTctttcagtgttgttttattcGTTCGGACGTTAATAAAACACCCGGGATGGACACGTTTTTCTAAATCGAGCAAAAACAACGATTATGCCTGCACCTCGAAGGGCGGATCCCGCGGGATTacgcttgcacacacacacacacacacacacacacacacacacgcgcggtTGAACTTTTGGCAAGCTCGCAGTCAACGTCTTTGCAATGGAAACTGTATTTTGCAGGTCTTCGGTTCCGTGACGCCTtgggaaaacatttttgtttgcctTTGTGGTGTTGTCCCCTCTGTTTTACACTCGCAAACCTAATTCGTAGGATTAAACGCTCCGTTTTGGACCCTT
>TU221723
GGGCGGGGCGTGCAGGAGTTTTGAACATGGCGGTGAGTAGAGCGAACGTTTCCTCACCGTTCACTTTATTATAAAACGCTTGTATAAAAGCTTGGCGTTTGCAAAcgaacacatacaaacacagacACGTCTCGTGTGCTCTTAAGGTTTAATTTCACACACTAGAGCCAGCTGGTTATAGCAAATGCGATGTTGTGTATTATTGCGCTAAGCTACATTGTCTGATGCGTGTTATACAGGCCTGCGGTATAATGTATAACCCGTGGTACTGATTTTCAGgataaagagaagaaaaagaaggagaGCATTTTTGATTTGTCGAAATATATCGACAAACATATAAGAGTGAAGTTCCAAGGCGGACGTGAAGCAAGCGGGGTCTTAAAAGGTTTCGACCCGCTGTTGAATCTCGTGTTGGATGGCACCATTGAATACATGCGAGATCCTGATGATCAGTATAAACTGACTGAAGACACCAGGCAGCTCGGTTTGGTCGTATGTCGAGGGACGTCCGTCGTActgatctgtccacaggacgGGATGGAGGCCATTCCCAACCCTTTCATTCAACAGCAAGACGGATAATATTcgtctgctttttttttttttttctttcttgcatTGTGTAGATGTCCTGTGAAGAAAATAGATGGTTTTCGTTCGctctgaaataatgaaaaaatacattttgtatttagacTCAGGATAAATGTGTTTGGTTGGGTTTTCCGTGCTTATTACGGTTTGAATTATAAGGCAtgttttctgttcatgaaaaaaaaaatgagtgcgTGATGCTGCCCGAGTTctttcagtgttgttttattcGTTCGGACGTTAATAAAACACCCGGGATGGACACGTTTTTCTAAATCGAGCAAAAACAACGATTATGCCTGCACCTCGAAGGGCGGATCCCGCGGGATTacgcttgcacacacacacacacacacacacacacacacacacgcgcggtTGAACTTTTGGCAAGCTCGCAGTCAACGTCTTTGCAATGGAAACTGTATTTTGCAGGTCTTCGGTTCCGTGACGCCTtgggaaaacatttttgtttgcctTTGTGGTGTTGTCCCCTCTGTTTTACACTCGCAAACCTAATTCGTAGGATTAAACGCTCCGTTTTGGACCCTT
>XM_043223023.1
TTGGTCGAGAGGCAAGCGTCAAACGTCTACGCGGAGTGGGCGGGGCGTGCAGGAGTTTTGAACATGGCGgataaagagaagaaaaagaaggagaGCATTTTTGATTTGTCGAAATATATCGACAAACATATAAGAGTGAAGTTCCAAGGCGGACGTGAAGCAAGCGGGGTCTTAAAAGGTTTCGACCCGCTGTTGAATCTCGTGTTGGATGGCACCATTGAATACATGCGAGATCCTGATGATCAGTATAAACTGACTGAAGACACCAGGCAGCTCGGTTTGGTCGTATGTCGAGGGACGTCCGTCGTActgatctgtccacaggacgGGATGGAGGCCATTCCCAACCCTTTCATTCAACAGCAAGACGGATAATATTcgtctgctttttttttttttttctttcttgcatTGTGTAGATGTCCTGTGAAGAAAATAGATGGTTTTCGTTCGctctgaaataatgaaaaaatacattttgtatttagacTCAGGATAAATGTGTTTGGTTGGGTTTTCCGTGCTTATTACGGTTTGAATTATAAGGCAtgttttctgttcatgaaaaaaaaaatgagtgcgTGATGCTGCCCGAGTTctttcagtgttgttttattcGTTCGGACGTTAATAAAACACCCGGGATGGA

Function

symbol description
lsm7 Predicted to contribute to RNA binding activity. Predicted to act upstream of or within mRNA splicing, via spliceosome and nuclear-transcribed mRNA catabolic process. Predicted to be located in nucleus. Predicted to be part of Lsm1-7-Pat1 complex; spliceosomal complex; and spliceosomal snRNP complex. Orthologous to human LSM7 (LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated).

NR:

description
PREDICTED: U6 snRNA-associated Sm-like protein LSm7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221722 False 902 TUCP 0.44 4 5847168 5848586
TU221723 True 1149 lncRNA 0.44 3 5847168 5848586
XM_043223023.1 False 649 mRNA 0.43 4 5847131 5848296

Neighbor

gene id symbol gene type direction distance location
mfsd14a1 mfsd14a,hiat1b,LOC107695628,LOC107704433,LOC107731334,LOC107756019 coding upstream 7483 5831270 ~ 5839648 (+)
abhd14a LOC107756017,LOC107586929,LOC107695627,LOC107704435,LOC107593054,LOC107731335 coding upstream 16797 5825104 ~ 5830334 (+)
rassf1 rassf1,LOC107756015,LOC107695625,LOC107704437,LOC107586927,LOC107731340 coding upstream 44169 5794921 ~ 5802962 (+)
LOC122327460 cenpp,LOC107704453,LOC107658387,LOC107731326,LOC107593065 coding upstream 121923 5673011 ~ 5725208 (+)
wu:fb55g09 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 coding upstream 191752 5654029 ~ 5655379 (+)
tmprss9 tmprss9,LOC107695615,LOC107704409,LOC107731339,LOC107593090,LOC107586983 coding downstream 2729 5851315 ~ 5859224 (+)
enc3 enc3,LOC107731329,LOC107593050,LOC107695631,LOC107586932,LOC107755983,LOC103464111,LOC103138520 coding downstream 14294 5862880 ~ 5872295 (+)
LOC122327565 LOC107756023 coding downstream 145802 5994388 ~ 6002630 (+)
LOC122327535 NA coding downstream 157896 6006482 ~ 6008186 (+)
bcor bcor,LOC107756025,LOC107745971,LOC107593046 coding downstream 173420 6022006 ~ 6069920 (+)
G149811 NA non-coding upstream 83969 5758011 ~ 5763162 (+)
G149810 NA non-coding upstream 93318 5753179 ~ 5753813 (+)
G149809 NA non-coding upstream 94635 5752232 ~ 5752496 (+)
G149806 NA non-coding upstream 100815 5739572 ~ 5746316 (+)
G149790 LOC107586918 non-coding upstream 175756 5668465 ~ 5671375 (+)
G149829 NA non-coding downstream 406 5848992 ~ 5849918 (+)
G149834 NA non-coding downstream 34378 5882964 ~ 5885190 (+)
G149846 NA non-coding downstream 56247 5904833 ~ 5913295 (+)
G149874 NA non-coding downstream 146287 5994873 ~ 5997676 (+)
LOC122327604 NA non-coding downstream 249286 6097872 ~ 6098526 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other upstream 23029 5810478 ~ 5824102 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other upstream 40508 5803726 ~ 5806623 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other upstream 57741 5772335 ~ 5789390 (+)
LOC122327321 NA other upstream 102080 5734408 ~ 5745051 (+)
LOC122327428 NA other upstream 389775 5453165 ~ 5457356 (+)
LOC122327524 NA other downstream 75321 5923907 ~ 6012681 (+)
G149895 NA other downstream 343061 6191647 ~ 6192659 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other downstream 387531 6236117 ~ 6239357 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other downstream 654328 6502914 ~ 6510456 (+)
G150369 NA other downstream 859902 6708488 ~ 6708891 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020237 lsm7 coding NC_007133.7 CM002906.2 10752511 ~ 10756047 (+)