G149806


Basic Information

Item Value
gene id G149806
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5739572 ~ 5746316 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU221671
tttttttttttttttttttttATTCCAgcacaatttctttttatttgtggcTGCACACAAGGAGACGCCCGAATGCgtaaacattttaacagaacGCTGATCATTTTTAACATACACCTCAGTTAATAAACCCGAATCATATCAAACGTGACAAGAATCTGCGGAAGATTGTACCCAGAGGGATTGAAAACATATGACCCAACTTCAATGAGAGCACGTCGCAGCCAAGCGGCTCACAATTCGCCCTCTTCCTGCCCTTGAACGGcgttcactttttaaaattgagaGTTTCGCATCACTTCAAGTCATTTCGGACCGAATTATTGCCGTTCTTTCAAACGCAGCGGTACGCTTATCAGACCCTCGAGCAAAGAGTTCGCAAGAGAAACGCGTATAAACATGGCGTTTCTGCAACATCCGAAACCCGAACTCCATAAAACAATCCAAACGCAAACCATGGGAACGTTGCGTTTAAGGCATAAGCTGCATTAAATAAGGCATATTCCGGATCTCCGAGCGCGAGAACGCTTTGATGAAACATTCACAAATTCAAAAACCCCGAATGCTACGAGAATCGTGAACAAATCATGTGCCGGCGTTGTTAAATGCACCATAAAGTGTCGACGGTTTGTGCGAATTCCCAGGATAAAATAAAGCTGGCGGTATTTAAGGCGTCGAAGCGGCATTTCGAGACGAGGCGTGCTGCCCGTTCGGAGGCCGGTTAAACGTTTCCCTTTTGCTCAGTGGACGAAAACGAACGAAACATAAACGTTATATGGCTTAGAGTCATGCGCAGCGGCTGgagtgaataaaaatgtacgtatATAAAAGTAAGTCGAGAAAACGAGGCTGACACACAAAGATAGCGAATGCAGAAGGTATAGTTCCCGACTCGATTGGAAGATGCTGTCCGCAGTAGATGAACATTGCGCTCCTGCAGGGTGAAGATGATAATTCAGGTCGCGGTTTAGTAGCCGGTCTTTGGTTGCTCCACGTAAGCGGGGTTGTAAGCCGGTTGAGTCGCGCTGTAGTCTGTCGGTGGGGGTGCGAAGCCGGGCTGAACTGGGGGTTGTAAGGGGTACGAGGCCTGCCCACCGTCATATGCTGCTTTGCTGTAAGGAAAAGGATATCCTGGGCC
>TU221672
ttttttttttttttttttttTGTTTAACAGTGATTCCAgcacaatttctttttatttgtggcTGCACACAAGGAGACGCCCGAATGCgtaaacattttaacagaacGCTGATCATTTTTAACATACACCTCAGTTAATAAACCCGAATCATATCAAACGTGACAAGAATCTGCGGAAGATTGTACCCAGAGGGATTGAAAACATATGACCCAACTTCAATGAGAGCACGTCGCAGCCAAGCGGCTCACAATTCGCCCTCTTCCTGCCCTTGAACGGcgttcactttttaaaattgagaGTTTCGCATCACTTCAAGTCATTTCGGACCGAATTATTGCCGTTCTTTCAAACGCAGCGGTACGCTTATCAGACCCTCGAGCAAAGAGTTCGCAAGAGAAACGCGTATAAACATGGCGTTTCTGCAACATCCGAAACCCGAACTCCATAAAACAATCCAAACGCAAACCATGGGAACGTTGCGTTTAAGGCATAAGCTGCATTAAATAAGGCATATTCCGGATCTCCGAGCGCGAGAACGCTTTGATGAAACATTCACAAATTCAAAAACCCCGAATGCTACGAGAATCGTGAACAAATCATGTGCCGGCGTTGTTAAATGCACCATAAAGTGTCGACGGTTTGTGCGAATTCCCAGGATAAAATAAAGCTGGCGGTATTTAAGGCGTCGAAGCGGCATTTCGAGACGAGGCGTGCTGCCCGTTCGGAGGCCGGTTAAACGTTTCCCTTTTGCTCAGTGGACGAAAACGAACGAAACATAAACGTTATATGGCTTAGAGTCATGCGCAGCGGCTGgagtgaataaaaatgtacgtatATAAAAGTAAGTCGAGAAAACGAGGCTGACACACAAAGATAGCGAATGCAGAAGGTATAGTTCCCGACTCGATTGGAAGATGCTGTCCGCAGTAGATGAACATTGCGCTCCTGCAGGGTGAAGATGATAATTCAGGTCGCGGTTTAGTAGCCGGTCTTTGGTTGCTCCACGTAAGCGGGGTTGTAAGCCGGTTGAGTCGCGCTGTAGTCTGTCGGTGGGGGTGCGAAGCCGGGCTGAACTGGGGGTTGTAAGGGGTACGAGGCCTGCCCACCGTCATATGCTGCTTTGCTGTAAGGAAAAGGATATCCTGGGCC

Function

GO:

id name namespace
GO:0019787 ubiquitin-like protein transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU221671 False 1138 lncRNA 0.46 2 5739572 5746316
TU221672 True 1149 lncRNA 0.46 2 5739572 5746316

Neighbor

gene id symbol gene type direction distance location
LOC122327460 cenpp,LOC107704453,LOC107658387,LOC107731326,LOC107593065 coding upstream 14364 5673011 ~ 5725208 (+)
wu:fb55g09 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 coding upstream 84193 5654029 ~ 5655379 (+)
ccdc71 si:dkeyp-87e7.4,LOC107658392,LOC107593069,LOC107745409,LOC107721008,LOC107586916,LOC107653172 coding upstream 136297 5590344 ~ 5603275 (+)
kctd6a kctd6a,LOC107658394,LOC107586999,LOC107653167,LOC107593104,LOC107745413 coding upstream 151230 5583929 ~ 5588342 (+)
pdhb pdhb,LOC107721006,LOC107586915,LOC107745408,LOC107658396,LOC107593072,LOC107653173 coding upstream 156531 5578185 ~ 5583041 (+)
rassf1 rassf1,LOC107756015,LOC107695625,LOC107704437,LOC107586927,LOC107731340 coding downstream 48605 5794921 ~ 5802962 (+)
abhd14a LOC107756017,LOC107586929,LOC107695627,LOC107704435,LOC107593054,LOC107731335 coding downstream 78788 5825104 ~ 5830334 (+)
mfsd14a1 mfsd14a,hiat1b,LOC107695628,LOC107704433,LOC107731334,LOC107756019 coding downstream 84954 5831270 ~ 5839648 (+)
tmprss9 tmprss9,LOC107695615,LOC107704409,LOC107731339,LOC107593090,LOC107586983 coding downstream 104999 5851315 ~ 5859224 (+)
enc3 enc3,LOC107731329,LOC107593050,LOC107695631,LOC107586932,LOC107755983,LOC103464111,LOC103138520 coding downstream 116564 5862880 ~ 5872295 (+)
G149790 LOC107586918 non-coding upstream 68197 5668465 ~ 5671375 (+)
G149786 NA non-coding upstream 85685 5653683 ~ 5653887 (+)
G149762 NA non-coding upstream 128756 5609797 ~ 5610816 (+)
G149733 NA non-coding upstream 206741 5531865 ~ 5532831 (+)
G149729 NA non-coding upstream 244582 5486341 ~ 5494990 (+)
G149809 NA non-coding downstream 5916 5752232 ~ 5752496 (+)
G149810 NA non-coding downstream 6863 5753179 ~ 5753813 (+)
G149811 NA non-coding downstream 11695 5758011 ~ 5763162 (+)
G149829 NA non-coding downstream 102676 5848992 ~ 5849918 (+)
G149834 NA non-coding downstream 136648 5882964 ~ 5885190 (+)
LOC122327428 NA other upstream 282216 5453165 ~ 5457356 (+)
LOC122327380 NA other upstream 535208 5186190 ~ 5204364 (+)
LOC122327529 NA other upstream 632148 5103493 ~ 5107424 (+)
G149646 NA other upstream 635136 5103529 ~ 5104436 (+)
LOC122328161 NA other upstream 740598 4992011 ~ 4998974 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other downstream 26019 5772335 ~ 5789390 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other downstream 57410 5803726 ~ 5806623 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other downstream 64162 5810478 ~ 5824102 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other downstream 100815 5847131 ~ 5848586 (+)
LOC122327524 NA other downstream 177591 5923907 ~ 6012681 (+)

Expression


Co-expression Network