kctd6a (kctd6a,LOC107658394,LOC107586999,LOC107653167,LOC107593104,LOC107745413)


Basic Information

Item Value
gene id kctd6a
gene name kctd6a,LOC107658394,LOC107586999,LOC107653167,LOC107593104,LOC107745413
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5583929 ~ 5588342 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222960.1
CGTGTCATTTCCGCTCATCCCACGCCGACGTCTCCCTCTCATCCGTCCCGCTCCGTGTGAATCCACAACATAAACATTACAGCTATCTTACAGCCTTTACTCGGGCAGCCGAGTCTCtcttaaactgaaatatacttatatttcgAAAAGCCTCTAAACTCTCCCCGTTTAATTCCTCCACATCCCGACGCTTTGAACGAGAAGAAACAACTCCACCGGACGAGGAGGAGAGACTAAATCCCCGAGACTTAACGCATTTGCAACGAGGTTGAGGTGTTTATACCCCGTAAAGGCTGCAGAGAGAGTCATTCATCGCACCGCTGAAGAGGAACCATTGGCCACATGGAGAATGGAGACTGGGCTCACATGatgatGGATACGGTTACCCTTAACGTTGGTGGCCACTTGTACACCACATCGCTCTCCACCCTCCAACGTTATCCGGACTCTATGTTGGGTGCAATGTTTCGTGGTGACTTTCCCACCGCACGAGACGCCCAGGGCAACTATTTCATAGATCGAGACGGTCCTCTATTCCGTTACATCTTAAACTTTTTACGAACGTCGAAACTGACTCTGCCATGTGACTTCAAAGAAACCGAGCTCCTTCGGAAGGAAGCAGACTTCTATCAGATCGAGCCCTTGATCCAGTGTTTAGGAGACACCAAACCACTTTATCCATTGGACACTTTTGAGCAAGTGGTAGAACTTTCAAGTACTCGTAAACTGTCCAAGTACTCAAACCCGGTGGCGGTCATTATCACCCAGCTCACGATCACCACCAAAGTTCACGCGCTACTTGAAGGCATCTCCAACAACTTCACCAGATGGAATAAACACATGATGGACACCAGAGACTTTCAAGTGTCTTTTACCTTTGGACCATGTGATTACCACCAAGAGGTTTCCCTTCGGGTGCATCTGGTGGAGTACATCTCCAAGCAAGGCTTCACGATTCGCAACACGCGGGTGCATCACATGAGCGAACGCGCCAACGAGAACACGGTAGAACATCACTGGACATTTTGTAGAGTTGCGCAAAAGGTTGAAGACTGATCGACGCTGCATTCATGTCAGAactttaaagatatttattgGTAAATTCCAAGCAATTTGAGCATTAACGAGTTTAACAAAGATAGGAGTGATTTTTAAGAGTTGCAAACTCGTAATTAAGGTAATTATTGTTTGAGGTAGCCAGTAATGAacagaatgaaaatgtttttgttgtatttggGCAAATTGTGTTATGTTCATCTTCTCAACCACTTTAGATGTTCATAGACAAAAGAAACCTAAACAATTTCTAGAACTACTATATACCTCATGCCTGGAAAAAGTgacccaatttttttttaaaattgtcagATCCATATGCAACTTGAATCTGCATATAtctgaaatgttaatatatgtaatgcatcaatgttaaatatacagtattcaGTTGTATTTATAGTATTTCTGCAGATATTTTGTCCTGTGATTGTCTTTCAACTATAAATGGTTTGCATGATTCTATGGTATCTGCACTATTGTTGATTCAGTAATATTTCCTCTTTGAAATATGTGTAAACGGCTTAATTCGCATTATGCTCAATATGTTTTCTTGCCCAAAGCTTTAAGCAAACAATACCTCTTTGGCTTCTAGACCAAAATTTGGAGTTAATGTCccatttaaaagtgattttggtCTCAAAATGCATGCAAGACTCGAGTTAGTACCTGTGAAGCTAAGAACATCCATTAAAATTGAAGAGTTCATTCATGTGTGTAATGAATTTGACctacacattaaaaacaagtgtttcatcatatattattatttggttgTAGATGTCTTGGAATAACATTTCATTGGAAGAACCTTTTGGTTTTAtcattgtaattaatttaaattatcattttaatgggAAAGTTACTTTCAGATGCCACTCTTTCAAATGCAATAACTTGAATAAATAACTGGATTATCTAAATA

Function

symbol description
kctd6a Predicted to act upstream of or within protein homooligomerization. Orthologous to human KCTD6 (potassium channel tetramerization domain containing 6).

NR:

description
BTB/POZ domain-containing protein KCTD6

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21916 KCTD6; BTB/POZ domain-containing protein KCTD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222960.1 True 1981 mRNA 0.40 3 5583929 5588342

Neighbor

gene id symbol gene type direction distance location
pdhb pdhb,LOC107721006,LOC107586915,LOC107745408,LOC107658396,LOC107593072,LOC107653173 coding upstream 888 5578185 ~ 5583041 (+)
pxk pxk,LOC107658395,LOC107653174,LOC107745407 coding upstream 6927 5561280 ~ 5577002 (+)
LOC122327560 rpp14,LOC107658379,LOC107745404,LOC107586974,LOC103374991 coding upstream 23016 5560276 ~ 5560913 (+)
rpp14 LOC107653175,LOC107720992,LOC107745405 coding upstream 23594 5558909 ~ 5560335 (+)
tbc1d20 tbc1d20,LOC107658381,LOC107653176,LOC107573569,LOC107586998 coding upstream 33375 5542427 ~ 5550554 (+)
ccdc71 si:dkeyp-87e7.4,LOC107658392,LOC107593069,LOC107745409,LOC107721008,LOC107586916,LOC107653172 coding downstream 2002 5590344 ~ 5603275 (+)
wu:fb55g09 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 coding downstream 65687 5654029 ~ 5655379 (+)
LOC122327460 cenpp,LOC107704453,LOC107658387,LOC107731326,LOC107593065 coding downstream 84669 5673011 ~ 5725208 (+)
rassf1 rassf1,LOC107756015,LOC107695625,LOC107704437,LOC107586927,LOC107731340 coding downstream 206579 5794921 ~ 5802962 (+)
abhd14a LOC107756017,LOC107586929,LOC107695627,LOC107704435,LOC107593054,LOC107731335 coding downstream 236762 5825104 ~ 5830334 (+)
G149733 NA non-coding upstream 51098 5531865 ~ 5532831 (+)
G149729 NA non-coding upstream 88939 5486341 ~ 5494990 (+)
G149720 NA non-coding upstream 145494 5436837 ~ 5438435 (+)
G149641 NA non-coding upstream 509301 5073993 ~ 5074628 (+)
G149627 NA non-coding upstream 513929 4973734 ~ 5070000 (+)
G149762 NA non-coding downstream 21455 5609797 ~ 5610816 (+)
G149786 NA non-coding downstream 65341 5653683 ~ 5653887 (+)
G149790 LOC107586918 non-coding downstream 80123 5668465 ~ 5671375 (+)
G149806 NA non-coding downstream 151230 5739572 ~ 5746316 (+)
G149809 NA non-coding downstream 163890 5752232 ~ 5752496 (+)
LOC122327428 NA other upstream 126573 5453165 ~ 5457356 (+)
LOC122327380 NA other upstream 379565 5186190 ~ 5204364 (+)
LOC122327529 NA other upstream 476505 5103493 ~ 5107424 (+)
G149646 NA other upstream 479493 5103529 ~ 5104436 (+)
LOC122328161 NA other upstream 584955 4992011 ~ 4998974 (+)
LOC122327321 NA other downstream 146066 5734408 ~ 5745051 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other downstream 183993 5772335 ~ 5789390 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other downstream 215384 5803726 ~ 5806623 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other downstream 222136 5810478 ~ 5824102 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other downstream 258789 5847131 ~ 5848586 (+)

Expression


Co-expression Network