rpp14 (LOC107653175,LOC107720992,LOC107745405)


Basic Information

Item Value
gene id rpp14
gene name LOC107653175,LOC107720992,LOC107745405
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5558909 ~ 5560335 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223019.1
GATGCTCGCTGACCGCCTGAAATAAACCCACTGTGAAAAACTACAAGTTATGGAGGACCCTTACAAATTTGAGCGACACGTGTACAAAAACGCTTCGGTCTACCATTACATGAAGATCTCCCTagttTTGGAAAGTGGACACAAATCTATTAACGACGCACAGTTCAAACAACTGATTATCTGTGGACTGAGAGACCTGTACGGAGAGATCGGAGCTGCTTTTCCGTTCGACCTGCTCAAGTTCGATCAGAACAAGCTGACCGGGATACTGCGAGTGTACAACAGCGGTCTGGTGAAACTGTGGAGCGCACTGACGTTACTGGGATCTCATCAACATGAGGCATGCGCGTTCAGAGTCACCCAGGTGTCGCCGTTTTTGCTAGCGCTATCTGGGAACAGCCGCGAGCTGCAGACCaactgaccaaaaaaaacatccttttgGAAAATGGTGTTTTTTCTCGGAAGAAGCGCGTTCGGCGGAAATGTGTCCCGTTTTGTCCACTCT

Function

NR:

description
ribonuclease P protein subunit p14

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0090501 RNA phosphodiester bond hydrolysis biological_process
GO:0004540 ribonuclease activity molecular_function

KEGG:

id description
K14529 RPP14; ribonuclease P protein subunit RPP14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223019.1 True 505 mRNA 0.49 5 5558909 5560335

Neighbor

gene id symbol gene type direction distance location
tbc1d20 tbc1d20,LOC107658381,LOC107653176,LOC107573569,LOC107586998 coding upstream 8355 5542427 ~ 5550554 (+)
LOC122327438 NA coding upstream 36199 5518869 ~ 5522710 (+)
LOC122328172 NA coding upstream 44908 5503769 ~ 5514001 (+)
LOC122327430 NA coding upstream 59251 5496205 ~ 5499658 (+)
LOC122327391 LOC107653181,LOC107741386 coding upstream 87423 5467299 ~ 5471486 (+)
pxk pxk,LOC107658395,LOC107653174,LOC107745407 coding downstream 945 5561280 ~ 5577002 (+)
pdhb pdhb,LOC107721006,LOC107586915,LOC107745408,LOC107658396,LOC107593072,LOC107653173 coding downstream 17850 5578185 ~ 5583041 (+)
kctd6a kctd6a,LOC107658394,LOC107586999,LOC107653167,LOC107593104,LOC107745413 coding downstream 23594 5583929 ~ 5588342 (+)
ccdc71 si:dkeyp-87e7.4,LOC107658392,LOC107593069,LOC107745409,LOC107721008,LOC107586916,LOC107653172 coding downstream 30009 5590344 ~ 5603275 (+)
wu:fb55g09 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 coding downstream 93694 5654029 ~ 5655379 (+)
G149733 NA non-coding upstream 26078 5531865 ~ 5532831 (+)
G149729 NA non-coding upstream 63919 5486341 ~ 5494990 (+)
G149720 NA non-coding upstream 120474 5436837 ~ 5438435 (+)
G149641 NA non-coding upstream 484281 5073993 ~ 5074628 (+)
G149627 NA non-coding upstream 488909 4973734 ~ 5070000 (+)
G149762 NA non-coding downstream 49462 5609797 ~ 5610816 (+)
G149786 NA non-coding downstream 93348 5653683 ~ 5653887 (+)
G149790 LOC107586918 non-coding downstream 108130 5668465 ~ 5671375 (+)
G149806 NA non-coding downstream 179237 5739572 ~ 5746316 (+)
G149809 NA non-coding downstream 191897 5752232 ~ 5752496 (+)
LOC122327428 NA other upstream 101553 5453165 ~ 5457356 (+)
LOC122327380 NA other upstream 354545 5186190 ~ 5204364 (+)
LOC122327529 NA other upstream 451485 5103493 ~ 5107424 (+)
G149646 NA other upstream 454473 5103529 ~ 5104436 (+)
LOC122328161 NA other upstream 559935 4992011 ~ 4998974 (+)
LOC122327321 NA other downstream 174073 5734408 ~ 5745051 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other downstream 212000 5772335 ~ 5789390 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other downstream 243391 5803726 ~ 5806623 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other downstream 250143 5810478 ~ 5824102 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other downstream 286796 5847131 ~ 5848586 (+)

Expression


Co-expression Network