LOC122328172


Basic Information

Item Value
gene id LOC122328172
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5503769 ~ 5514001 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223878.1
GATCTCACAATTCATTCCTGAGAACCACTTTCACACAACTGGATTAGTCCTCGCATGTAAATTATTTCAATTCtattttgtagcttttttttttttgtaattttaagaCATGGAGCATGTTAACTCTTTATGAACATGTAAATAACTGTTTGTAAGCGGAGTAGATAATTACTGAATTGCATCatgcagaaataatattttggagAGTGATAAATGGAAGATGATGCACGACTCTACTTTATTCTGCCTCTGTTTATTGATCATGAATGgtgtgtttggcgCTGATACAGATGAAGTGAAGTCAGTATCAGTGACTGAGGGAGATTCTGTCGATCTAGACACTAATGTTACTGAAGTACAGACAGATGATCAGATACTGTGGATGTTTGGACCTCAAGAGACTCGTGTAGCTGAAATATATAACCAGAATATCAAAATGTATAATAGTGATGAAACATTTGTAGACAGACTGAAGATAGACAGTcagactggactttataAACTATCTATCTTCAGCAAAAGAGGAACCTCATACAAGAGATACAGCCTTACTGTCTATGCTCTTCTGCCCATTCCCATAATCACCAGAAACTCTTCACTatgttcttcatcatcatcatcttgttCGCTGCTGTGTTCGGTGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcAGGAGAATaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACTTCAGTCAGCTCTGTCAGACATGTCCAGGATGGTTTGATGTAAACCCAGTCTTTGCTGCATGTGTGTCTGCTGCAGCTCTGCTTGTACTCGTGAGTGTGATCTACTGTCTCTACAGGAAACACAAAAGAGCGACACAAAACAGTAAGCACTGTCTTCTGTACCTTTCTTCGCTTCATTTGTTTTGCTTCCAGTCAAGCAAGCCTCTTTTACTTCTTCTGAAGAATATGATTCGATTGCTATTCATTTTATGGATCTTGGGAGATGTGTCGCTTGTTGAAGCTTTTGGACCAAAGACAGCGTCGCAGTCTCTTGAAATTCGCAGACATGTTTTACcgtgttcaccatcagacaaaAAATGTGAGATTAAGTGTTCAGCATTCAATGTTCAAGAAGCAAATGTAACGTGGTTTAAAGGAAATCAAGTTTGTTCACAAATCAGTGTCATTGCTCATAACCCTAACCCCTCTCTAAACCTGGAGGTGGAATATCAGGATAAAAGTAACTACACCTGTGTGCTCAACAGTCCCAGCAGAAACCAGAATTTGACTGCCAACATCGCTCACCTCTGTCAGGAATGCAAGAAAAACATGATTCCGCTGCCAGTGAAGAAGGGAAAATCTGTCACTCTGCACACTTTTACTTTTCGAACCATATCAAAGTATTTTCATATCATATGGATGTTTGGACCTCGTAAGATTGTCATTGCGGAAATTCTGAATAATCAAAAGACGACTGACTGCGACGAGAGATTCAAAGACAGACTCAAGCTCGACAGTCAAACCGGAGATCTCACCATCACCGACACCAAAAAAACAGACTCTGGAATCTATCAACTAGAGATATACGGTGACTCTTTTGACTGCAGTATTTTCAATTTAACTGTCAGTGATCCTCTGCCAAGTCCTCAAATTTCCAGTCACTCCGATCGCTGTCCGTCCTCAGGCTCAGAATGTGGAGTGGAGTGTTCAGTGTTGAACGTGAGTCacgtgactctctcctggtacaaaggaaacagttcACTGTCCAGCATCACTGTATTAGATGTCAACTATTTATGCCTGAAGCTGGATGTTAAGGATAATGGCAACTACAGCTGTGTGGTCTCCAATTCCCTCATCAATGAGACTAAATATCTCATCATCGGTGAAGTTTGTTCAGACCACGGGGGTAATCCCACTTGGAAGATAATTTTGagatgtgttgttgtttttgcattttttgttgctTTGATATGTTTGTTCAAGGATCGACGAAGAAGaaACGCCCAGAGATTATGAAGACAGCAACCCTGCATATCAAAATCAACCTTTGATGAACCGTTCTTCTTtcaaagatgttaaaaatagCAACAGTACTACCGTATATGTACGTTTGTTTACAATAAcgcataaaaacaaacaaacccgtATACTGTATGTGGTGTTACGTTCATCTTGTTAATTTATGACCACAAGATGGCTCAAGTAGAGCATTTAAATACTTTCTCACACCGTTCCACAGCAACTAACTCAAACCTaagcacacattttaaaatgaacgaGATCAGTGATAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223878.1 True 2374 mRNA 0.40 12 5503769 5514001

Neighbor

gene id symbol gene type direction distance location
LOC122327430 NA coding upstream 4111 5496205 ~ 5499658 (+)
LOC122327391 LOC107653181,LOC107741386 coding upstream 32283 5467299 ~ 5471486 (+)
LOC122327309 LOC107653162,LOC107720973,LOC107676138,LOC107574024 coding upstream 36723 5459460 ~ 5467046 (+)
LOC122327385 NA coding upstream 53838 5445700 ~ 5449931 (+)
LOC122327431 LOC107586973 coding upstream 75423 5424016 ~ 5428346 (+)
LOC122327438 NA coding downstream 4868 5518869 ~ 5522710 (+)
tbc1d20 tbc1d20,LOC107658381,LOC107653176,LOC107573569,LOC107586998 coding downstream 28426 5542427 ~ 5550554 (+)
rpp14 LOC107653175,LOC107720992,LOC107745405 coding downstream 44908 5558909 ~ 5560335 (+)
LOC122327560 rpp14,LOC107658379,LOC107745404,LOC107586974,LOC103374991 coding downstream 46275 5560276 ~ 5560913 (+)
pxk pxk,LOC107658395,LOC107653174,LOC107745407 coding downstream 47279 5561280 ~ 5577002 (+)
G149729 NA non-coding upstream 8779 5486341 ~ 5494990 (+)
G149720 NA non-coding upstream 65334 5436837 ~ 5438435 (+)
G149641 NA non-coding upstream 429141 5073993 ~ 5074628 (+)
G149627 NA non-coding upstream 433769 4973734 ~ 5070000 (+)
G149624 LOC107720998,LOC107653181 non-coding upstream 521583 4944699 ~ 4982186 (+)
G149733 NA non-coding downstream 17864 5531865 ~ 5532831 (+)
G149762 NA non-coding downstream 95796 5609797 ~ 5610816 (+)
G149786 NA non-coding downstream 139682 5653683 ~ 5653887 (+)
G149790 LOC107586918 non-coding downstream 154464 5668465 ~ 5671375 (+)
G149806 NA non-coding downstream 225571 5739572 ~ 5746316 (+)
LOC122327428 NA other upstream 46413 5453165 ~ 5457356 (+)
LOC122327380 NA other upstream 299405 5186190 ~ 5204364 (+)
LOC122327529 NA other upstream 396345 5103493 ~ 5107424 (+)
G149646 NA other upstream 399333 5103529 ~ 5104436 (+)
LOC122328161 NA other upstream 504795 4992011 ~ 4998974 (+)
LOC122327321 NA other downstream 220407 5734408 ~ 5745051 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other downstream 258334 5772335 ~ 5789390 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other downstream 289725 5803726 ~ 5806623 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other downstream 296477 5810478 ~ 5824102 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other downstream 333130 5847131 ~ 5848586 (+)

Expression


Co-expression Network