LOC122327309 (LOC107653162,LOC107720973,LOC107676138,LOC107574024)


Basic Information

Item Value
gene id LOC122327309
gene name LOC107653162,LOC107720973,LOC107676138,LOC107574024
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5459460 ~ 5467046 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222577.1
TATGTTGATGAATCTAAACGCATCGTTTTTATTGTCTGCCTGTTTCAAAATCCCGCGAATCGGTGTGTTAAGTTTTTATGAAGCAGACTGATGAGACGATTGCGAGTTACTTCTATCGAAAAAAGTTCAAAGATGGAGCTCTGCGGCAGCGCCTGCCTGCGTTGACATCCGCCTTGAAAACCTCCGTTCTTTACTGTGGTTATCAGCCATGTTTATTTGATAGCTCTTGTGAGTGTAGGTTTAATACACGGAAATATAGACGCAAATGGATGCGGCGCGTAAACACAATCAACATGAAAGACATGGCCGAGAAGAACAGCTCTTTATTACAGAAGAAACCGATTAAGAGCCACTAGACTAGCCTACAGGTAAGCTGTTACTGTGGACTATATGCCGGTATATTAACGTTCTGGATTGTTAAGAAAAAAGACAGCGatgtacaattatatataaatgaggtGTGCACAAAGGCTTGTGATGTTAGTGTCGccaatttaaaacttttaaagtatttaaaaccaatataagctattatgccattttaaaaatacttcaatTTTATAATACCgataacatttattgttataaaaaaatattttgctgcTTTAAACTTTTGTGATGCACCATTCGAACGTTTGGGATACTTGCATTCATCTAGGATATATTCAGTAAATATTTCTGTTCCCTTCGTGTGTGATGTGCATGAACAGTGGACAGATGTTTGGAAGCCATTTTGGACTTTGTGTTGTAGCATCAAGCCCCAACCACCACCTAGTAACCTCAAAAGTAATTGTAAGGATACTTATTACTTTTCCAGATTATAGCTCTCAATTTGGGGATAACCTGAAAGTCTCACCCTAATCACCCTAAACTCAAGTGTCAGGCTATATTGGCtcaagccaaaaaaaatgtcttttagatggcattaaaatgattatagcTACTCAGCCATTTGTCCCATTGGCTTGAAGCTTAATATGAAGTGTCTTTGTTCAATGTGCCATGAGGGTCATTGGCATATCTCAAAAAAATTTGGCTGCCATCAGCCAATGAATTTTAAGCACCTATTAGACAAGGTCGTTCAGAAGAAAAAGCAATGGGCATGTTCAACTCATAGCCCTGAAAGTCTGtatgaattttgaaaaaaatcagccACTAGTTGGTGCTAAAAAATGagataaggtttttttttgtttgtttgtttgtttgtttttttatatataaagtggTGTTTCACAGATCTCCTCATTCTTAGCAACTTTGCTTCCGGGATTAATGCATCAATCATATCTTTCAATTTGATATTCAAACTGAGCATTAAAAGACCTGAaactaatgtaaatgtttgctttaaaatatagaCATTAATTATGAAGCATAACAATTACTCCTAAACCATTTATCCTAACACAGCAGAAAAACTGTGAGGTTAGAAGACCCACTTAAAGAGGATAattatggaaagaaaaaaaagatgtattgAAAatgttAACAGTATTGAAACAGAGTTTGGAAACATGGCACTTCAACAGCATGACAACGTTtcacaacataataataataatagttctaCATCGCTCAGACAACCTACAATTAAAAATTCAGACCGGTATCTTCAAGATTTCAGAATTGACCAAAAAAATGGTGGCACAGTTGTCTCTCCAAACATACTAGGATCCAAAATAGCTGGTGATGTTTTAGTGAACGTCAATGTGcaacaAGTGTCCCACTTTACCTCAGTAAACAGCAATGAAACTCTTCAGAGCGTAAAGCATAAGATGAAAATGAGAATGAAGACGGAATCTGAGAGGATTTTGGAGGGATGTGCACAACAGTCAGTCTCTCTAAATAAGATCTACACTCAACTTTTCATCATCAGTGATGAGTCAGACCCCATCGttaaagaaaacaagacttGGCATATCGAGATGATGaatgatttaaacaaaatagTGAAGGAAATAAACTACAATGACATTCTTAACCCACCCCTGGATGTAATCAGAAACATGAAGGTAGTTTTAACAAAAGGAATGGCCGGAATTGGGAAAACCGTGACCGTGCAGAAGTTTGTCCACGACTGGGCAAGTGGACAAGCCAATCAGGATCTAGAGCTTGTTCTTCTGCTCCCATTCCGAGAGCTGAACTTGTGTGATGAGGAAAACCAGAGTCTTGACCTGCTTTGTGCCTTGTATCCAGAGTTCAAAGAGGCGAAACCTATCTCTGACCAGATCTTTGATAGAAAAGTTCTGTTCATCTTAGATGGTCTggatgaatataaaaatgaactgagctttaaaacaagcattttgTCAGATGTTACTAAAAAAACCAAACTGGATGTTCTCCTAGAAAACCTTCTAAGAGGAAAACTGCTTCCGTCCGCACACCTGTGGATTACCAGTCGGCCCGTGGCAGCTGAGCAGCTTCCCTCTGAGATCTTCAGTCAGGGATATGTCACGCAGATCagaggattcacagatgaacaaAAGGAGAAGTACTTCATGAGGCACTTTGAGGATCCAGATCTAACCCAGAAAGTCATCAGTCACCTAAAGTCTCATAAGTGCTTGTGGATACTGTGTCAAATACCCCTATTTTGTTGGATTTCATCAGCTGTTCTGAAAGCCATcattaaaagtcaaaataaagacATGCCCACAAATCAGACAGAAATGTATATCCACTATCTGCTCATTCAGACTGGGTTAAGCCACAAAAAATATCAAGGGCAAAATGTCTCACAACAAGACGCTCTCATACAGCACAAAGAACTGATTAAGAAACTTGCAGAACTGGCATATGGGAAGCTGAAGGAACAGAGCACAATGTTCAGTAAAGAAGACTTGAGAAAATATTATATCACTCCTGATGAAGCTCTTCGATATCTTGGCATCATTACCTGTGTCCACGAGTGCAAGTTTGGATATAACAGGACTAAACATTTCAGCTTTGTCCACCGCAGTTTACAGGAATTCTTTGCAGCCTTATTTGTTTTCCATGAATTTCTATCAGGAAATGAAGACTCCCTGGGATTAACTAAAGCGAAAAAGGGGCAAAAGTCTAATTTGTCAGATTTTCTAAAAAGCGTAATTGATGTGGCCGTGGAAAGTAAAAATGAACACTTGGATCTTTTTATCTCTTTTCTGTTTGGAATTTCTTGTGATTCCAGCAGACATATACTCGAAGGATTCCTGCCTCGACCGGAAAACAGTAGTTTAGAAGATCACAAAAAAATCACCAAATACATTAAGTCTTTGAGGAGGAAAGATTTGTCTCCTGAGAGATGTTTTAGTCTTGTTCATTGCATCGTGGAGCTCAAGGACATGTCTTTTTTGCAGATACCAAATCTTGAATCCTCACGGACCAAAAAGCCCCTCACACTGTTCCAGTGCACGCTTCTGGCTTTCCAGTTTGTGATGTCAGATACAGACCATGATGAGTTTGTCCTCAGGAAATTCAAGATAACTTTAGAAGGATTTCAGAGATTCTCTCCAGCCATTATATGCTTCAGACATGCTATGCTCACAGGAAGCGGCTTTACAGAGAAACACTGTGAAATCCTGGTGCCTTTTCTTACCTCACCAAACTCTCGCCTGACTCATCTTGATCTAAGCCACAACAGTCTGGGGCTTTCTGCACTGAAGCAACTTTCAAAAGCCTTGTGTGATCCCAAATGTCAGATTGAGATGCTGAACCTCAGCCACAACGGCCTCCGTGGTCAGGACATGGACTTCATCAAGCAAGTGCTTTCAGGATCAAATGTGAAGCTGAAAATCCTGGATCTCAGTGATAATCATCTAGAAGACGAAGGAGTGAAAATCCTCTCAGCTGGGCTGCGGAGTGCTAAGTGTCATCTTGAAGTTCTGAAACTTTTAGGCTGTCAGATTCAAGATGGAGGTTTGAAGTTGCTGTCATCTATGAAAGCCAGTCTAAGAGAGCTGGACCTGCGGTATAATAACCTTGGAAAACCTGTGGAAAATAAAGTTTGTGAACTGAAAGATAAGCTACCCTCACTAAGAATTTACACTGGTGGAGTCTGCAGTCACCAACCAGGGCTGTACAAATATGCTGTCGCGCTTACCTTTGACCCTCGGACAGTTAACGAATACCTCTATCTGAACGAGGACAACACAGTAGCTGTTCATAAGAGAGAAAGGCAACAGCTACCTGCTAATGATGAAAGATTTGACAAGTGCAACCAGGTCCTGTGCTGCCAGCCGCTGTCAGGACGCTGCTTCTTTACGGCAGATGTGATCGGGACAGAGGTGCGCATGGGTGTGGCCTGCAAGGGAATCAACAGGAAGGGTACGAATGATGCCGTACTTCTGGGACGCAATAAGATGTCGTGGTGTTTATGCTGCTCAAAAAGTCTATTTGTGgctcatgacaaaaaaaaagaatcggTAACTAAACCACTTCAAACAGAGTCCACCAGAAAACTTGCTGTGTTTCTGGACCAAGAGGCTGgttctatttatttctatagGCTGATCCCAGACTCTGATCCAGAACTCTTGCACATGTTTGATGCAAAGTTTCCTCCTGATGAGGAACTTTACCCTGCATTTAGTATTCAGAAACCAGACAGCTCAGTCCGTTTACAGCAAGCATCACTGTAACTATATGCTTACACTTACAGTTTGTGTTCATGACATGAATGATGCCTCACATCAGGAGAGAGGGATCAGACATGGATTATTCACCTGGCAGACCTTCTAAAAACAGCCAGCTAGTAACCCAGAAGATCAGCAGTTATTGATACATGACTTCATCATTATCAGTTGCTTTATAAACACTACACAACAGTGCTATGGCATTTTTGTGTTTGCGttacagttaaaatgtcttAAGTTGTGTATATCTCAACATAACTggttttctttaatgaaaaataaagctgcATTAATTGGA

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222577.1 True 4914 mRNA 0.40 10 5459460 5467046

Neighbor

gene id symbol gene type direction distance location
LOC122327385 NA coding upstream 9529 5445700 ~ 5449931 (+)
LOC122327431 LOC107586973 coding upstream 31114 5424016 ~ 5428346 (+)
LOC122327443 LOC107754875,LOC107694203 coding upstream 50114 5404466 ~ 5409346 (+)
LOC122327507 NA coding upstream 59581 5398687 ~ 5399879 (+)
LOC122328169 NA coding upstream 64560 5385057 ~ 5394900 (+)
LOC122327391 LOC107653181,LOC107741386 coding downstream 253 5467299 ~ 5471486 (+)
LOC122327430 NA coding downstream 29159 5496205 ~ 5499658 (+)
LOC122328172 NA coding downstream 36723 5503769 ~ 5514001 (+)
LOC122327438 NA coding downstream 51823 5518869 ~ 5522710 (+)
tbc1d20 tbc1d20,LOC107658381,LOC107653176,LOC107573569,LOC107586998 coding downstream 75381 5542427 ~ 5550554 (+)
G149720 NA non-coding upstream 21025 5436837 ~ 5438435 (+)
G149641 NA non-coding upstream 384832 5073993 ~ 5074628 (+)
G149627 NA non-coding upstream 389460 4973734 ~ 5070000 (+)
G149624 LOC107720998,LOC107653181 non-coding upstream 477274 4944699 ~ 4982186 (+)
G149615 NA non-coding upstream 657383 4798640 ~ 4802077 (+)
G149729 NA non-coding downstream 19295 5486341 ~ 5494990 (+)
G149733 NA non-coding downstream 64819 5531865 ~ 5532831 (+)
G149762 NA non-coding downstream 142751 5609797 ~ 5610816 (+)
G149786 NA non-coding downstream 186637 5653683 ~ 5653887 (+)
G149790 LOC107586918 non-coding downstream 201419 5668465 ~ 5671375 (+)
LOC122327428 NA other upstream 2104 5453165 ~ 5457356 (+)
LOC122327380 NA other upstream 255096 5186190 ~ 5204364 (+)
LOC122327529 NA other upstream 352036 5103493 ~ 5107424 (+)
G149646 NA other upstream 355024 5103529 ~ 5104436 (+)
LOC122328161 NA other upstream 460486 4992011 ~ 4998974 (+)
LOC122327321 NA other downstream 267362 5734408 ~ 5745051 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other downstream 305289 5772335 ~ 5789390 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other downstream 336680 5803726 ~ 5806623 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other downstream 343432 5810478 ~ 5824102 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other downstream 380085 5847131 ~ 5848586 (+)

Expression


Co-expression Network