LOC122327431 (LOC107586973)


Basic Information

Item Value
gene id LOC122327431
gene name LOC107586973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5424016 ~ 5428346 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222793.1
ACTTCCTCACCATCAGCATATACTTCTGTCTCGCAGCTGCTGGTTTGAACGCATGTTTTCCTCGGAGCTATGAAGACTTTAATTGTCGGAAATCGTTCGGACATCTTCTGAGGAATATGCATTCGGACGCTGCTTTCATTTGTCTATGGATTCTTATCACAAATGgtgtgtttgatgttAAATCAGATGAGATTGTGTCAGTATCAGTGACTGAGGGAGATTCTGTCACTCTAAACACTGATGTTAAAGGACTCAGAGATGATCAGATACTGTGGACGTTTGGACCTCAAGACACTCGATTAGCGGAAATCTTTAAAAGGGACCAAATGAACTTATTTTTTGTCAGTAATGAGGGGAGATTCAGAGACAAACTACAGTTAAACAATCAAACTGGAAATCTGACCATCAACAACATCAGATCTGAACACACTGGACTTTATAAACTGACTGCCATCATCAGTGGAAAAACCTCATTGAAGAGCTTCAGTGTTACTGTGTTCGCTCCTCTTCCCCCTCCTGTCATCACCAGAAACTCTTCAAACtgttcttcttcatcatcatctaaACGTTCATCAGTGTCCAGATGTTTCCTGCTGTGTTCGGCGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACATCAGTGAAGTCTGTCAGGCATGTGCAGAACATCAAACTTTCAGTTCCATACCAGTGGTAGTTGGTATATTGTTGCCGCTGACCATAGTTTGTGTAGTTGCAGGGACTGTGTGGTACATCAGGAACCATAAACAAACATCACACACTGTTAAAACAGAAAACGAAGACATACATTATGCTACAGCAATATTCATTGCACGTCCATTAGATAATACGaaacCAGCTGAAGAAAGCACAGTGTACTCAAGCGTTGCAATACCAAAGGAACAAAACTTGCAGTATTTGTAAGTTTCTCTCAACTGAAACAGGAGGATTTGTGGGCCCAGtatttggaaaaatattatAACTAATGTAACCATAATcatg
>XM_043222794.1
ACTTAACATTAGTAAATATCGTTATTTATTGACAagcatattttcttttctccatTGCAACTTATTGTTTGCACTAAACTTTACGTGTATATAGAATTGCTTTATGACCAGTTACTTATGATGTTCATCACTCGttagtcactttggataaaagtacGCTGCTGGTTTGAACGCATGTTTTCCTCGGAGCTATGAAGACTTTAATTGTCGGAAATCGTTCGGACATCTTCTGAGGAATATGCATTCGGACGCTGCTTTCATTTGTCTATGGATTCTTATCACAAATGgtgtgtttgatgttAAATCAGATGAGATTGTGTCAGTATCAGTGACTGAGGGAGATTCTGTCACTCTAAACACTGATGTTAAAGGACTCAGAGATGATCAGATACTGTGGACGTTTGGACCTCAAGACACTCGATTAGCGGAAATCTTTAAAAGGGACCAAATGAACTTATTTTTTGTCAGTAATGAGGGGAGATTCAGAGACAAACTACAGTTAAACAATCAAACTGGAAATCTGACCATCAACAACATCAGATCTGAACACACTGGACTTTATAAACTGACTGCCATCATCAGTGGAAAAACCTCATTGAAGAGCTTCAGTGTTACTGTGTTCGCTCCTCTTCCCCCTCCTGTCATCACCAGAAACTCTTCAAACtgttcttcttcatcatcatctaaACGTTCATCAGTGTCCAGATGTTTCCTGCTGTGTTCGGCGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACATCAGTGAAGTCTGTCAGGCATGTGCAGAACATCAAACTTTCAGTTCCATACCAGTGGTAGTTGGTATATTGTTGCCGCTGACCATAGTTTGTGTAGTTGCAGGGACTGTGTGGTACATCAGGAACCATAAACAAACATCACACACTGTTAAAACAGAAAACGAAGACATACATTATGCTACAGCAATATTCATTGCACGTCCATTAGATAATACGaaacCAGCTGAAGAAAGCACAGTGTACTCAAGCGTTGCAATACCAAAGGAACAAAACTTGCAGTATTTGTAAGTTTCTCTCAACTGAAACAGGAGGATTTGTGGGCCCAGtatttggaaaaatattatAACTAATGTAACCATAATcatg
>XM_043222795.1
CTTCCTCACCATCAGCATATACTTCTGTCTCGCAGCTGCTGGTTTGAACGCATGTTTTCCTCGGAGCTATGAAGACTTTAATTGTCGGAAATCGTTCGGACATCTTCTGAGGAATATGCATTCGGACGCTGCTTTCATTTGTCTATGGATTCTTATCACAAATGgtgtgtttgatgttAAATCAGATGAGATTGTGTCAGTATCAGTGACTGAGGGAGATTCTGTCACTCTAAACACTGATGTTAAAGGACTCAGAGATGATCAGATACTGTGGACGTTTGGACCTCAAGACACTCGATTAGCGGAAATCTTTAAAAGGGACCAAATGAACTTATTTTTTGTCAGTAATGAGGGGAGATTCAGAGACAAACTACAGTTAAACAATCAAACTGGAAATCTGACCATCAACAACATCAGATCTGAACACACTGGACTTTATAAACTGACTGCCATCATCAGTGGAAAAACCTCATTGAAGAGCTTCAGTGTTACTGTGTTCGCTCCTCTTCCCCCTCCTGTCATCACCAGAAACTCTTCAAACtgttcttcttcatcatcatctaaACGTTCATCAGTGTCCAGATGTTTCCTGCTGTGTTCGGCGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACATCAGTGAAGTCTGTCAGGCATGTGCAGAACATCAAACTTTCAGTTCCATACCAGTGGTAGTTGGTATATTGTTGCCGCTGACCATAGTTTGTGTAGTTGCAGGGACTGTGTGGTACATCAGGAACCATAAACAAACATCACACACTGaaacCAGCTGAAGAAAGCACAGTGTACTCAAGCGTTGCAATACCAAAGGAACAAAACTTGCAGTATTTGTAAGTTTCTCTCAACTGAAACAGGAGGATTTGTGGGCCCAGtatttggaaaaatattatAACTAATGTAACCATAATcatg

Function

NR:

description
PREDICTED: SLAM family member 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222793.1 False 1148 mRNA 0.41 6 5424749 5428346
XM_043222794.1 True 1270 mRNA 0.40 7 5424016 5428346
XM_043222795.1 False 1079 mRNA 0.42 5 5424750 5428346

Neighbor

gene id symbol gene type direction distance location
LOC122327443 LOC107754875,LOC107694203 coding upstream 14670 5404466 ~ 5409346 (+)
LOC122327507 NA coding upstream 24137 5398687 ~ 5399879 (+)
LOC122328169 NA coding upstream 29116 5385057 ~ 5394900 (+)
LOC122327440 NA coding upstream 40617 5380181 ~ 5383399 (+)
strip1 strip1,LOC107655420,LOC107754611,LOC107653179,LOC107570607 coding upstream 105262 5310533 ~ 5318754 (+)
LOC122327385 NA coding downstream 17354 5445700 ~ 5449931 (+)
LOC122327309 LOC107653162,LOC107720973,LOC107676138,LOC107574024 coding downstream 31114 5459460 ~ 5467046 (+)
LOC122327391 LOC107653181,LOC107741386 coding downstream 38953 5467299 ~ 5471486 (+)
LOC122327430 NA coding downstream 67859 5496205 ~ 5499658 (+)
LOC122328172 NA coding downstream 75423 5503769 ~ 5514001 (+)
G149641 NA non-coding upstream 349388 5073993 ~ 5074628 (+)
G149627 NA non-coding upstream 354016 4973734 ~ 5070000 (+)
G149624 LOC107720998,LOC107653181 non-coding upstream 441830 4944699 ~ 4982186 (+)
G149615 NA non-coding upstream 621939 4798640 ~ 4802077 (+)
G149400 gpd1b,LOC107721242,LOC107727040,LOC107698578,LOC107566434 non-coding upstream 646835 4773476 ~ 4777181 (+)
G149720 NA non-coding downstream 8491 5436837 ~ 5438435 (+)
G149729 NA non-coding downstream 57995 5486341 ~ 5494990 (+)
G149733 NA non-coding downstream 103519 5531865 ~ 5532831 (+)
G149762 NA non-coding downstream 181451 5609797 ~ 5610816 (+)
G149786 NA non-coding downstream 225337 5653683 ~ 5653887 (+)
LOC122327380 NA other upstream 219652 5186190 ~ 5204364 (+)
LOC122327529 NA other upstream 316592 5103493 ~ 5107424 (+)
G149646 NA other upstream 319580 5103529 ~ 5104436 (+)
LOC122328161 NA other upstream 425042 4992011 ~ 4998974 (+)
LOC122327517 NA other upstream 708013 4712862 ~ 4716003 (+)
LOC122327428 NA other downstream 24819 5453165 ~ 5457356 (+)
LOC122327321 NA other downstream 306062 5734408 ~ 5745051 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other downstream 343989 5772335 ~ 5789390 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other downstream 375380 5803726 ~ 5806623 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other downstream 382132 5810478 ~ 5824102 (+)

Expression


Co-expression Network