RNA id: XM_043223878.1


Basic Information

Item Value
RNA id XM_043223878.1
length 2374
RNA type mRNA
GC content 0.40
exon number 12
gene id LOC122328172
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5503769 ~ 5514001 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCTCACAATTCATTCCTGAGAACCACTTTCACACAACTGGATTAGTCCTCGCATGTAAATTATTTCAATTCtattttgtagcttttttttttttgtaattttaagaCATGGAGCATGTTAACTCTTTATGAACATGTAAATAACTGTTTGTAAGCGGAGTAGATAATTACTGAATTGCATCatgcagaaataatattttggagAGTGATAAATGGAAGATGATGCACGACTCTACTTTATTCTGCCTCTGTTTATTGATCATGAATGgtgtgtttggcgCTGATACAGATGAAGTGAAGTCAGTATCAGTGACTGAGGGAGATTCTGTCGATCTAGACACTAATGTTACTGAAGTACAGACAGATGATCAGATACTGTGGATGTTTGGACCTCAAGAGACTCGTGTAGCTGAAATATATAACCAGAATATCAAAATGTATAATAGTGATGAAACATTTGTAGACAGACTGAAGATAGACAGTcagactggactttataAACTATCTATCTTCAGCAAAAGAGGAACCTCATACAAGAGATACAGCCTTACTGTCTATGCTCTTCTGCCCATTCCCATAATCACCAGAAACTCTTCACTatgttcttcatcatcatcatcttgttCGCTGCTGTGTTCGGTGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcAGGAGAATaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACTTCAGTCAGCTCTGTCAGACATGTCCAGGATGGTTTGATGTAAACCCAGTCTTTGCTGCATGTGTGTCTGCTGCAGCTCTGCTTGTACTCGTGAGTGTGATCTACTGTCTCTACAGGAAACACAAAAGAGCGACACAAAACAGTAAGCACTGTCTTCTGTACCTTTCTTCGCTTCATTTGTTTTGCTTCCAGTCAAGCAAGCCTCTTTTACTTCTTCTGAAGAATATGATTCGATTGCTATTCATTTTATGGATCTTGGGAGATGTGTCGCTTGTTGAAGCTTTTGGACCAAAGACAGCGTCGCAGTCTCTTGAAATTCGCAGACATGTTTTACcgtgttcaccatcagacaaaAAATGTGAGATTAAGTGTTCAGCATTCAATGTTCAAGAAGCAAATGTAACGTGGTTTAAAGGAAATCAAGTTTGTTCACAAATCAGTGTCATTGCTCATAACCCTAACCCCTCTCTAAACCTGGAGGTGGAATATCAGGATAAAAGTAACTACACCTGTGTGCTCAACAGTCCCAGCAGAAACCAGAATTTGACTGCCAACATCGCTCACCTCTGTCAGGAATGCAAGAAAAACATGATTCCGCTGCCAGTGAAGAAGGGAAAATCTGTCACTCTGCACACTTTTACTTTTCGAACCATATCAAAGTATTTTCATATCATATGGATGTTTGGACCTCGTAAGATTGTCATTGCGGAAATTCTGAATAATCAAAAGACGACTGACTGCGACGAGAGATTCAAAGACAGACTCAAGCTCGACAGTCAAACCGGAGATCTCACCATCACCGACACCAAAAAAACAGACTCTGGAATCTATCAACTAGAGATATACGGTGACTCTTTTGACTGCAGTATTTTCAATTTAACTGTCAGTGATCCTCTGCCAAGTCCTCAAATTTCCAGTCACTCCGATCGCTGTCCGTCCTCAGGCTCAGAATGTGGAGTGGAGTGTTCAGTGTTGAACGTGAGTCacgtgactctctcctggtacaaaggaaacagttcACTGTCCAGCATCACTGTATTAGATGTCAACTATTTATGCCTGAAGCTGGATGTTAAGGATAATGGCAACTACAGCTGTGTGGTCTCCAATTCCCTCATCAATGAGACTAAATATCTCATCATCGGTGAAGTTTGTTCAGACCACGGGGGTAATCCCACTTGGAAGATAATTTTGagatgtgttgttgtttttgcattttttgttgctTTGATATGTTTGTTCAAGGATCGACGAAGAAGaaACGCCCAGAGATTATGAAGACAGCAACCCTGCATATCAAAATCAACCTTTGATGAACCGTTCTTCTTtcaaagatgttaaaaatagCAACAGTACTACCGTATATGTACGTTTGTTTACAATAAcgcataaaaacaaacaaacccgtATACTGTATGTGGTGTTACGTTCATCTTGTTAATTTATGACCACAAGATGGCTCAAGTAGAGCATTTAAATACTTTCTCACACCGTTCCACAGCAACTAACTCAAACCTaagcacacattttaaaatgaacgaGATCAGTGATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221556 lncRNA upstream 8779 5486341 ~ 5494990 (+) True G149729
TU221542 lncRNA upstream 46425 5455573 ~ 5457344 (+) False LOC122327428
TU221540 lncRNA upstream 65334 5436837 ~ 5438435 (+) True G149720
TU221458 lncRNA upstream 299405 5203038 ~ 5204364 (+) False LOC122327380
TU221416 lncRNA upstream 396364 5105815 ~ 5107405 (+) False LOC122327529
TU221564 lncRNA downstream 17864 5531865 ~ 5532831 (+) True G149733
TU221605 lncRNA downstream 95796 5609797 ~ 5610816 (+) True G149762
TU221643 lncRNA downstream 139682 5653683 ~ 5653887 (+) True G149786
TU221649 lncRNA downstream 154464 5668465 ~ 5671375 (+) True G149790
TU221671 lncRNA downstream 225571 5739572 ~ 5746316 (+) False G149806
XM_043222791.1 mRNA upstream 4111 5496205 ~ 5499658 (+) False LOC122327430
XM_043222792.1 mRNA upstream 4111 5496973 ~ 5499658 (+) False LOC122327430
XM_043222790.1 mRNA upstream 4111 5496998 ~ 5499658 (+) True LOC122327430
XM_043222724.1 mRNA upstream 32283 5467299 ~ 5471486 (+) True LOC122327391
XM_043222723.1 mRNA upstream 32283 5467299 ~ 5471486 (+) False LOC122327391
XM_043222804.1 mRNA downstream 4868 5518869 ~ 5522710 (+) True LOC122327438
XM_043222710.1 mRNA downstream 28426 5542427 ~ 5550554 (+) True tbc1d20
XM_043223019.1 mRNA downstream 44908 5558909 ~ 5560335 (+) True rpp14
XM_043223007.1 mRNA downstream 46275 5560276 ~ 5560913 (+) True LOC122327560
XM_043222621.1 mRNA downstream 47279 5561280 ~ 5577002 (+) True pxk
TU221516 other upstream 48342 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 399333 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 787817 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1265700 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1650398 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 220407 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 289775 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 333167 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 677646 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 724286 6238287 ~ 6239357 (+) False npb

Expression Profile