RNA id: TU221649


Basic Information

Item Value
RNA id TU221649
length 1980
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G149790
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5668465 ~ 5671375 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTAGAAAGAGCACCCTGAATGAGTTTCCTCTGTTGCTCGGTTTCTTTCTGTCGTTGCTCCTGTGCCGCGAGACGTTTCTGGTTGTCCTGCTGTTGTTTCTTAGCATCTATCACAGTTGAGTGAAGGACTGTTTGATGTGAAACAACATGCTCCTGATCGTTCTTCCAAGTGGCAGGCTTAGTTTTGGATTTCTCATCATCACTAGTTTCCGATTCTTCACTAGAAGAGTCACTACTGGAGGATCTGGAAGACTTTGTCTGACTGGGTTTGATTGAGTTATTAGAGCTTTTTAGTTCAGTTTCAGGGGTGATTCTTGCTAATTGTGCTGCTGAAGAGGTTTTAGAAGCGGGGACTTTAGCATTATCTTCTTCCTCGCTGCTTTCTGATTCTTCACCTGAAGATTCACTGCTGGAGGATCCAGAGGTCTTTTTCTGCTTGGGTTTGATGGAGTTATTAGAATTACTAGTTTTTAGTTCGGTTTCAGGGCTGGTTTTTGCTGACTGTGATGCTGAAGACCTTTTAGAAATGGAAACCATAGCATTATCTTCTTCCTCGCTGCTTTCTGATTCTTCACTTGAAGAGTCACTGCTGGAGGATCTGGAGGTCTTCGTCTGACTGGTTTTGACTGGGGTGTTTGAGTTATTAGAGCTAACAGTCTTTAGTTTGGTTTCAGGGATGGCTCTTACTGATTGTGATGCTGAAGATGTTTTAGAAGTGAAGGCATCTTCTTTACAACTGCTTTCTGATTCTTCGCTAGACGAATCATCTTCTGAGGacgctttattttgaagtttttttgaAACTGATTGTCTATTTAAATTGGATAATGTCTGCAGAGATAGACGGTTTGAAGACTGCGGTTGACTTGTGTCTTCTAAGATGCTTTGTTCTTTCTGCTTGAGTCTTTTAGGAGAGTCACAGTCTATATTTTGGGCGACTCTTTTCAGGCTGGGCTCTGGTCCTCCAAAAAGATCCTTCGTTCCAATGAAAGCAGGAAGAGATACAGCATTTACctgattcttcttcttcttcttactTTCTTTATCAGGAGTGTCATCTCCCAAAAGGGAAGCAAGAATATCTTCTGGGttattggctgtttttttggGTGGTGCACTTGGGGTCTTGGGTTCATCTTTTGCTTTTTCTACACTTTCATCATCTGAAAACACGTCTGCTTTTTTAGCTAGCTGCTCCAAGTCCGCTAGGGAAATATCTAAACGGTAGCAGTTCCCCATCATGGCTTCATAATCAGAATCTACGCTAACATCACTAtcatcagattcagattcagactTGTTTTTACTGGATTCTGTTGGAAAATCCTGACTGGCTGGTGTACATTCAACTTTTTGGGTTTTTCTCTGAGTGAGTATTTCATCAGTGTCGGCAGAATCATATTCCTCATCATCTTTTGATGAAGTAAAAAGGGGCGTCTTCATGTCATCTTGTTCCACTCCACCCCAGAAAACATTAGACTTGACAACAAAATCATCTCCAACCACCTCCAGCTTGCCATCATCATCCTCCGTGGAGGTTTGTTTAGGGTTCCTCAAATGCTCTTGAGCAACCAACATCCTGATTTCTTCTTCAGAGTCAGAGTCGTTGTCAAAAACACGAACAGATGTTTGCTTTCCCGGCTTTAGTCCATTTTGTTGGATCGCCACTGTGTTTCCAGTGGCAGCCGCATTAATTCCATTTCTCTGAGCCAAATTTCTAAGAAACAAACTTACATCTATTTTGGATCTTTTGGGACAAGTTTTCTGCTCTGGAAACTCTCCCCGCCTTTTCTTACTGATTTCATCGTCTCCACCTTCAATCTCCCACGTCAGCTTGGACACCGATGTGACGTCATCCCCAATCTCCAGTTTCTTGATGTTGTGGCAGTGTTTGGATGGATCATACTTAAAGACctTGTGCTTTCCTTCACACTTCAGATTCACGACAGGAAGTACCCTCCCAAATTTACTCACGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221643 lncRNA upstream 14578 5653683 ~ 5653887 (+) True G149786
TU221605 lncRNA upstream 57649 5609797 ~ 5610816 (+) True G149762
TU221564 lncRNA upstream 135634 5531865 ~ 5532831 (+) True G149733
TU221556 lncRNA upstream 173475 5486341 ~ 5494990 (+) True G149729
TU221542 lncRNA upstream 211121 5455573 ~ 5457344 (+) False LOC122327428
TU221671 lncRNA downstream 68197 5739572 ~ 5746316 (+) False G149806
TU221672 lncRNA downstream 68197 5739572 ~ 5746316 (+) True G149806
TU221681 lncRNA downstream 80857 5752232 ~ 5752496 (+) True G149809
TU221683 lncRNA downstream 81804 5753179 ~ 5753718 (+) True G149810
TU221682 lncRNA downstream 82119 5753494 ~ 5753813 (+) False G149810
XM_043222992.1 mRNA upstream 13086 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222771.1 mRNA upstream 65190 5590344 ~ 5603275 (+) True ccdc71
XM_043222960.1 mRNA upstream 80123 5583929 ~ 5588342 (+) True kctd6a
XM_043222749.1 mRNA upstream 85424 5578185 ~ 5583041 (+) True pdhb
XM_043222624.1 mRNA upstream 91463 5562678 ~ 5577002 (+) False pxk
XM_043222845.1 mRNA downstream 1636 5673011 ~ 5725208 (+) True LOC122327460
XM_043222596.1 mRNA downstream 63034 5734409 ~ 5743120 (+) False LOC122327321
XM_043222597.1 mRNA downstream 63041 5734416 ~ 5743120 (+) False LOC122327321
XM_043222598.1 mRNA downstream 63086 5734461 ~ 5745051 (+) True LOC122327321
XM_043222554.1 mRNA downstream 101067 5772442 ~ 5789390 (+) False rad54l2
TU221516 other upstream 213038 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 564029 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 952513 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1430396 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1815094 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 63033 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 132401 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 175793 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 520272 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 566912 6238287 ~ 6239357 (+) False npb

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_07968740_07975571.mRNA True 2797 mRNA 0.43 9 CI01000030 7968676 ~ 7975721 (+)