RNA id: XM_043222845.1


Basic Information

Item Value
RNA id XM_043222845.1
length 1072
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC122327460
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5673011 ~ 5725208 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTACGCTCCACGTTGACGCGGGATTTGGTTGAATCGGTCGGTATCGAGAAGTCGCCGTGTTTACCTTCAGAGCGACATTAAAcTGGTTTAGTAGATTGAGGAAGATGATGGAGCAGAAGTACGAGGAAGAGATCCAGATGCTCCAGCAGGAAATTGAAACACTGGAGGCTGAACAGGAGGAGACTTTACGGTCCATTTTCATCGAGCATGGAGATCGACTACAGCGGGAACTAACGTCAGTCTGTGATGAACGAGGAGGGGCACAAAAGCACGCTCTTTCAAAGCTGATCACAGAAGTCCGAGAGCTGGAAAAAAACCTCAGGCGACAGACCGAAATCAACGGGATCGCTCTAAATGAGTGTCTTGTGAAGACATTGCACAAAAgtgaAAGAAAACTTGTACAGCAGCTCAGACTTGCAGGTCACTGCAGTGCACTTTTGTTCCAGGTTGAATTTGCCGTGACTGAGATTCAGGAGGACGATGCACTGCTCAGGAGAGTTACAGAGCTCAATATCGTTGTGGATGGTGTTGAATTCAAAGATTTCTCTGCATTTGTGTCCAGAGTGGAGGACACAAAAGATCTTCTCTTGTTCTTCAGGACCTTGAGGACATTCTCTGACAGGTGCGAGGAGAGGCGTCAAACGTTTCAGCACTTTCAGGAGAAGTACCCAGACGTGGTCAGCCTTCCAGAGGGATGCCGATCCGAGCTCATGATTATAAGAAGTCCTCAACTTCCAGGGATCTCCATGACCATTTTTTGGAAGATCGACGTGTCCATGGCAGGAGTGGTAAAGCCATCTCTTGAGCTTCTGCTGAAAATGCCAGACCAGGCTCGGGAGTTTGACACCAAAAAAGTGATGGAAAACGGCCCGGAGTACTTTCAGAGCCTCCTGCGTCTTCTCGGGGTGGAAGCATCCATCGAGAGCTTGATAAGAACTGCCAGTGACGCAACCAGCTTGGTAAAGGTCTTTGCCAGAGTCAGCCAGGTTTGTTAACATCGCTAGCTGAAGGTCATGCCATCAGCCAAAGACATAAATCCAGCTCCACTAACTCACCCTGAGAAGAGATCCAG

Function

GO:

id name namespace
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11508 CENPP; centromere protein P

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221649 lncRNA upstream 1636 5668465 ~ 5671375 (+) True G149790
TU221643 lncRNA upstream 19124 5653683 ~ 5653887 (+) True G149786
TU221605 lncRNA upstream 62195 5609797 ~ 5610816 (+) True G149762
TU221564 lncRNA upstream 140180 5531865 ~ 5532831 (+) True G149733
TU221556 lncRNA upstream 178021 5486341 ~ 5494990 (+) True G149729
TU221671 lncRNA downstream 14364 5739572 ~ 5746316 (+) False G149806
TU221672 lncRNA downstream 14364 5739572 ~ 5746316 (+) True G149806
TU221681 lncRNA downstream 27024 5752232 ~ 5752496 (+) True G149809
TU221683 lncRNA downstream 27971 5753179 ~ 5753718 (+) True G149810
TU221682 lncRNA downstream 28286 5753494 ~ 5753813 (+) False G149810
XM_043222992.1 mRNA upstream 17632 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222771.1 mRNA upstream 69736 5590344 ~ 5603275 (+) True ccdc71
XM_043222960.1 mRNA upstream 84669 5583929 ~ 5588342 (+) True kctd6a
XM_043222749.1 mRNA upstream 89970 5578185 ~ 5583041 (+) True pdhb
XM_043222624.1 mRNA upstream 96009 5562678 ~ 5577002 (+) False pxk
XM_043222596.1 mRNA downstream 9201 5734409 ~ 5743120 (+) False LOC122327321
XM_043222597.1 mRNA downstream 9208 5734416 ~ 5743120 (+) False LOC122327321
XM_043222598.1 mRNA downstream 9253 5734461 ~ 5745051 (+) True LOC122327321
XM_043222554.1 mRNA downstream 47234 5772442 ~ 5789390 (+) False rad54l2
XM_043222552.1 mRNA downstream 47237 5772445 ~ 5789390 (+) True rad54l2
TU221516 other upstream 217584 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 568575 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 957059 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1434942 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1819640 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 9200 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 78568 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 121960 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 466439 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 513079 6238287 ~ 6239357 (+) False npb

Expression Profile