RNA id: TU221556


Basic Information

Item Value
RNA id TU221556
length 1166
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G149729
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5486341 ~ 5494990 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctgaGATAATGAGTGGATTAATTGTTCTAATAATCTTTGATTAATCAGTGACCAacatgactgacagacagacatgcatttttatgactgGATAGAGAAGAGAAATGAGTGAAGCTCCTCCCGCACTCATCACACGCGTAcagcttctctccggtgtggaccCTCTCGTGTATCTGTAGATACGCTGATCGTTTGAATCTCTTGccacagtgtgaacacttgaAAGGCGTTTCTGTAGAGTGAACTGTGTGATGCACCTTCAGAGCACTTTCTGTAACAAAAGTCTTCCCACATTCAGAGCAAGCGTGATCCTTCACGCCGCTGTGTCTTTTCTGGTGTATCTTTAAAGCACACATCTGcctgaaactctttccacacaaaGAACACACGTAAGGCTTCTCCTTTGTATGAACTGTCAGGTGGTCCTTCAAGTAATCGGGCCTAAAAAACTTTTTACCGCACTGGTCACAGCTATACAGCCTTTCTCTAGAATGAGTAAGCAGATGTACTTTATAAACACTTGATTGtctgaaactcttcccgcactgatcacaaGTGTACGGCTTTTCTCCGGTGTGGACTTTCATGTGGAAATTAAGGGCTCCTCTTCGCGAGTAAttcttcccgcactgatcacacgTGTGccgcttctctccggtgtggattgTCATGTGATTATTAAGGTTTGTTTTATGCGCGAAACacttcccgcactgatcacacgtgtgcggtttctctccggtgtggattttTACGTGTTTGTTGAGGTTGCTTTTAACCGAGAAcctcttcccgcactgatcgCATGagaacggcttctctccggtgtggactTTCAGGTGATCGTTAAGGTTTCCTTTTTTGGAAAAACCCTTCCCGCACCGATCACACGTGTGCGGTTTCTCTGCGGTGTGGATTTTCATGTGTTCGGTTAGGTTTTCTTTTATTGCGAAAATCTCACCGCACTGCTCACAAGCATACAGCGTCCCCCCACTGTGACATTTTATGTGAAGGTCCAGATTTTGCTTGCATgagaaactctttccacactgagggtAAGTGAAACATGTATTGTCGTTTTTCAGTGAAGGGCTCCAGGATGTTTCTTCAGTCTTGACATGATGTTTCTCCCCCTCTTCAATGAGTGCTTCAGTCTCCTTGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221542 lncRNA upstream 28997 5455573 ~ 5457344 (+) False LOC122327428
TU221540 lncRNA upstream 47906 5436837 ~ 5438435 (+) True G149720
TU221458 lncRNA upstream 281977 5203038 ~ 5204364 (+) False LOC122327380
TU221416 lncRNA upstream 378936 5105815 ~ 5107405 (+) False LOC122327529
TU221409 lncRNA upstream 411713 5073993 ~ 5074628 (+) True G149641
TU221564 lncRNA downstream 36875 5531865 ~ 5532831 (+) True G149733
TU221605 lncRNA downstream 114807 5609797 ~ 5610816 (+) True G149762
TU221643 lncRNA downstream 158693 5653683 ~ 5653887 (+) True G149786
TU221649 lncRNA downstream 173475 5668465 ~ 5671375 (+) True G149790
TU221671 lncRNA downstream 244582 5739572 ~ 5746316 (+) False G149806
XM_043222724.1 mRNA upstream 14855 5467299 ~ 5471486 (+) True LOC122327391
XM_043222723.1 mRNA upstream 14855 5467299 ~ 5471486 (+) False LOC122327391
XM_043222725.1 mRNA upstream 14855 5467299 ~ 5471486 (+) False LOC122327391
XM_043222577.1 mRNA upstream 19295 5459460 ~ 5467046 (+) True LOC122327309
XM_043222785.1 mRNA upstream 28985 5453561 ~ 5457356 (+) True LOC122327428
XM_043222791.1 mRNA downstream 1215 5496205 ~ 5499658 (+) False LOC122327430
XM_043222792.1 mRNA downstream 1983 5496973 ~ 5499658 (+) False LOC122327430
XM_043222790.1 mRNA downstream 2008 5496998 ~ 5499658 (+) True LOC122327430
XM_043223878.1 mRNA downstream 8779 5503769 ~ 5514001 (+) True LOC122328172
XM_043222804.1 mRNA downstream 23879 5518869 ~ 5522710 (+) True LOC122327438
TU221516 other upstream 30914 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 381905 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 770389 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1248272 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1632970 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 239418 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 308786 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 352178 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 696657 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 743297 6238287 ~ 6239357 (+) False npb

Expression Profile