RNA id: XM_043222725.1


Basic Information

Item Value
RNA id XM_043222725.1
length 2439
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122327391
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5467299 ~ 5471486 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatcacatttctATAATTGTTTCTAATTTTACACTGTATTAGATAACTATTTGCATTACAAGTGATTGTGTCATGATAGCAATAGCTGTTACTCTACAGGTGTTGCTGTAGCTGAAGTTGTAGGTTTTTAACACAGAAGATGAAAACAATCGTGAGAGAAAGGCAAGGGTGAGATTGAGAGGTGCATTAAGTTATCGCAACATTCTGTACACATTAGTATTAAAATATGGTAACCGTGGACTGTCTCTTTTCAGTATAAACAACCCCATCTTCCTTACACTCCTGTATCTACATGTGCTTACACGATCTCAATCCCAGACTCCTTTCAAGAACGAGGACAAAAACAATTACTCATTTTCTCAACTTTGCGGATTGCTGAAACGGTGTAAGGAAAGGGAGGATTCGTAGAActgaaatgcacattaaaatgcCCATTAAAACTCAAACCGAGTCATATCCGGCTCCTGGATCCGAAGAGATCCACCTGCGAACCACTCGCAAACGATCAGGCGAAGTAGCAGTCCATTTCCGCCGGCCGGAAACAAACACCTGCCGTTCTCGTTCCTACCGTTGATCTTTTATACCTAACCACGCCCCCTTCATTGATAATTTCACCCCTCAGACGTCACCTGCCacataagcatttttaaataagcaggTTACATTTAAGAACACGACAATTTATCCAACCAAACTACTCTTATGAAGGTGTACTGCAACCCAGGGATTCTCAAATTAAGATGGGAATGATTTCGCGAGAGATGAAATGGTGACCCGAGTGACTGAGAGAGATTTCATCATTCTTCACGACGATATTACCGAAACGCAGCGAGTCGACCGCGTGCTGTGGATGTTCGGATCTCCATATATTCACACCCCTGAAATCTACGAAAGGATCATCTCAACCTCAGACAGTTATGGGGGTTTTAGGGACAAGCTGAGGAGATCTCACATCATCTGGAGTTTCAGCAGCACATACGGGGCGACTCAAAATCAACTGTTCCTTTCCAGATCCTCCGTAAGAGTTGTACAGAATGTTTTAGCGATGGAGGGAGAACGTGTGATATTTTACCCCAATGCTACCGAAATAGAAAGAGGTGATTTGCTACAGTGGAGGTCTGCAGATGGAGGTCATCTGTGTAAAGCGATaagcaatgaaatgaaaatcacTGAATGTGACGAGAGCTTCGGAGACAGATTTCAGCTTGATTATCAGAGAGGATCTCTCACTATCAGGAACATAAGCGCAAAGGACCCCGGACTTTATGAATTTACCATCATCCGAAAAGGAACTATAAAAGCATGCATGCGTTATAGTGTTAAAGTCTACGCTAATCTACCCATTCCCGTCATCATCAGTAAATCTTCAAACTGTTCTTCTTCATCAACATCTAAAGATTCATCAGAGTCCAGATGTTCGCTGCTGTGTTCGGTGTTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcAGGAGAATaacacctacagctgtgtgatcaacaaccccatcagaaagCAGACCACACATCTGAACATCAGTCAACTCTGTCAGACATGTGAAGAACTCCTACATTCATCATTATCTTCATTATCATTACTATATATACTACTTATTTTAGTAGTTTTGGTCTTGACTGCAGTGGTTGCGAAGATGTATCGCAGAAGGAATCCCAGAGAAGAATTTCCATGGTCACATGACACTTGGTGATTGTCCTAGACTACTATTTCCACATGAATCCTGATaagtttgaaagtttttttttcctgtgcaaACTGACCTTTTTGAAGACTTCAAAGcggatgcattttaaaagtccATTTTCATGTTGTCATATAGTGTGGGCTGCGAAAACAGAGGAATTCGAAAACGTTCCAGTTTAGTCCTGTGATGCACATTGTACCCAGATATCACAGATTGTATACTGACATAGTTGTGCCTGCTTTTTTGAACTTCGACTCAGAGTAAaattgaaagtgaaagtgaaagtgaatgaCTGACAGCTAAAACTGCATTAGCATCACATTCTCCATACGTCATGGCCTCAAGGTGCTATGTTGAGGGAACAACATCCATTTCTTGTGGTATTATGTTGAGGGAACAACGTATTTTTCTAGTGGCCATGAGTTTGAGTAAACAAACCTGTCACCATAGCAAcccaggttttttttattttttattttattaattgatgAATTATTACGTAAATTGttctattgttttataatataaataactgtatcCATAGGTTACTGGACTGTATTGCatgatatgtaaataattaaaaaactacatattgaataataatatcatgaataaatgttacataaagtaaataaaataggcCAACACGAAAACATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221542 lncRNA upstream 9955 5455573 ~ 5457344 (+) False LOC122327428
TU221540 lncRNA upstream 28864 5436837 ~ 5438435 (+) True G149720
TU221458 lncRNA upstream 262935 5203038 ~ 5204364 (+) False LOC122327380
TU221416 lncRNA upstream 359894 5105815 ~ 5107405 (+) False LOC122327529
TU221409 lncRNA upstream 392671 5073993 ~ 5074628 (+) True G149641
TU221556 lncRNA downstream 14855 5486341 ~ 5494990 (+) True G149729
TU221564 lncRNA downstream 60379 5531865 ~ 5532831 (+) True G149733
TU221605 lncRNA downstream 138311 5609797 ~ 5610816 (+) True G149762
TU221643 lncRNA downstream 182197 5653683 ~ 5653887 (+) True G149786
TU221649 lncRNA downstream 196979 5668465 ~ 5671375 (+) True G149790
XM_043222577.1 mRNA upstream 253 5459460 ~ 5467046 (+) True LOC122327309
XM_043222785.1 mRNA upstream 9943 5453561 ~ 5457356 (+) True LOC122327428
XM_043222716.1 mRNA upstream 17368 5445702 ~ 5449931 (+) False LOC122327385
XM_043222791.1 mRNA downstream 24719 5496205 ~ 5499658 (+) False LOC122327430
XM_043222792.1 mRNA downstream 25487 5496973 ~ 5499658 (+) False LOC122327430
XM_043222790.1 mRNA downstream 25512 5496998 ~ 5499658 (+) True LOC122327430
XM_043223878.1 mRNA downstream 32283 5503769 ~ 5514001 (+) True LOC122328172
XM_043222804.1 mRNA downstream 47383 5518869 ~ 5522710 (+) True LOC122327438
TU221516 other upstream 11872 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 362863 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 751347 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1229230 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1613928 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 262922 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 332290 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 375682 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 720161 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 766801 6238287 ~ 6239357 (+) False npb

Expression Profile