RNA id: XM_043222785.1


Basic Information

Item Value
RNA id XM_043222785.1
length 2194
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC122327428
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5453165 ~ 5457356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGAGGGCGTGTGTACCGAAAGTTCAGACCTAACGGCACTTCTTTCCATCTTCATCTAGTTGTATTATTTCTATTCTGTTACTAAAGAGGTGACGGAACGCGCGGACTACATCTAAGAATGAACTTTTTTCGTAAGCAGAGGAACGGATAGACGCACTTTTTCACCCGTTTTCGCGCCATGTTTAGCCTATTGTTGGGTGTTTATGAAGTCCGAAAAATGATTCACAGCGCATCTGTCTTCTGCCTATGCCTTTTGCTTACGACTGGTGCTTTTGGTGCTGATACAGATGCAGTGAAGTCAGTATCAGTGACTGAGGGAGATTCTGTCCATCTAAACACTGATGTTACTGAAGTACAGACAGATGATCAGATACTGTGGATGTTTGGATCTAAAGAGACTCGTATCGCTGAAATTCACAGACAGAACGTCTATACAGAGGATAGTACTCATATATTTGGAGACAGACTGCAGATGGACAgtcagactggatctctgaccatcagaaacatcagaaccacagactctggactttataAACTACAGATCATCAGCAACAGAGAAACCCTATACAAGAGATTCAGTGTTGGTGTCTATGCTgctctttctcttcctgtcaTCTCCAGAGACTTTTCACAACATTCACAATCTGAAAGATCATCATTGTCCAGATGTTCACTGCTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaacaTCAGGAgaaaaacacctacagctgtgtgatcaacaacaccatcagaaaccagactcaACATCTGGACATCAGTCAACTCTGTGCAGAACTGGGAGAACGATCGCGTCTCAACATTTTAATAGCTGTTATAGCTCTGCTGCTGGTGTTGGTTGTAGTTTCAAGTTTGATGTACCGCCACAGGAAGCATAAACAATCGAAAAAGAAGTTAAGGTTCAAGAGGAAGAGATACTTTACGCCAGTACAACTTTTTGTGCATATCCGGTTAAGAATACGGGTGTCGTTGAAAAAGAACAAACTGAATATTCAACTGTTGCCCATTTTAAGACAGAAAAGGCCCCCGTGTTAAAAGAAGGAAGCCATTGTGTTTACAGCTGCGACATTGAGCGTTTATCAGGAACAGGAATTTATCAGGAATGAGCATTTATCAGCTTAACTCTGAATTTTCAAACGTGAAATGTATAAGACCAATTTTTCCTTATGGGAAAATTATGGAGCATATAGAACAGAACAAACGAACCACTTATAACGTGTTTCTgcaattgtttttgaaatataaccCCTCCTCTGTAATGTGAAATATGACTTTTATGGCGTTTATGATTTATCTGATATAACCAGATTTTTTTCACAACTTGAAAATGTGCAAACTGAATGTGACCAATACTGTTATACCTAGTGTTATAATGTTAAGAGCCCTTTGTAGcttgttttatatcattatgcttaggaaatgtattaaaagcagGTTAAGTGTAATCTAGGATATGGTATTAAAACATTAGAATTGCTGCATGGCTTGAAACGtgcctttaaatgaaaattgccGACACTGCAACATGTGCTACCCAGACGGACCACCATTTTGGAAATGTCGTCATGGCAACAAAAATGCGAATATCGGCACCTGACTGAACTTGGGTGTTGATTATATGTCACGTAGGGACTTTCTTGAGTTGAAAGGCATGCCGCTTTAAATAGACCTTTCAGGATAAGCAATAGTGTTCGTGACACCAGCGTCATCGTGGGTTCTTATGGGATTTTATGGGAAAATTTTTACACAATGGTCTGTTATTGAGGGAAcacttttaaatgcactttaaataagCCATATGTGTCATTTAATTCAACAGGGCATcttgctttattaatatttattacgaATGCCAGCAGATCCCTTTAGCGCAGCTCATTCCTTCCTCTCCATGCGTGCGGCCTATCCTAAGGGTGTGGAGCTAAAATGCAAGGAAACACTGAGGAAATGTGTTCTTTGGCTGTTGTTCGCTCCTGAAACTGCTTCCACcgatgtttaaaacaaaatcgATCATAGTTCCATGTTCATGCTTACATTGTGTCTCCAACCTCGTTCCTGTTCataaaaagcacttaaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221540 lncRNA upstream 15126 5436837 ~ 5438435 (+) True G149720
TU221458 lncRNA upstream 249197 5203038 ~ 5204364 (+) False LOC122327380
TU221416 lncRNA upstream 346156 5105815 ~ 5107405 (+) False LOC122327529
TU221409 lncRNA upstream 378933 5073993 ~ 5074628 (+) True G149641
TU221390 lncRNA upstream 454587 4992011 ~ 4998974 (+) False LOC122328161
TU221556 lncRNA downstream 28985 5486341 ~ 5494990 (+) True G149729
TU221564 lncRNA downstream 74509 5531865 ~ 5532831 (+) True G149733
TU221605 lncRNA downstream 152441 5609797 ~ 5610816 (+) True G149762
TU221643 lncRNA downstream 196327 5653683 ~ 5653887 (+) True G149786
TU221649 lncRNA downstream 211109 5668465 ~ 5671375 (+) True G149790
XM_043222713.1 mRNA upstream 3630 5445700 ~ 5449931 (+) True LOC122327385
XM_043222715.1 mRNA upstream 3630 5445701 ~ 5449931 (+) False LOC122327385
XM_043222716.1 mRNA upstream 3630 5445702 ~ 5449931 (+) False LOC122327385
XM_043222717.1 mRNA upstream 3630 5445704 ~ 5449931 (+) False LOC122327385
XM_043222718.1 mRNA upstream 3630 5445710 ~ 5449931 (+) False LOC122327385
XM_043222577.1 mRNA downstream 2104 5459460 ~ 5467046 (+) True LOC122327309
XM_043222724.1 mRNA downstream 9943 5467299 ~ 5471486 (+) True LOC122327391
XM_043222723.1 mRNA downstream 9943 5467299 ~ 5471486 (+) False LOC122327391
XM_043222725.1 mRNA downstream 9943 5467299 ~ 5471486 (+) False LOC122327391
XM_043222791.1 mRNA downstream 38849 5496205 ~ 5499658 (+) False LOC122327430
TU221415 other upstream 349125 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 737609 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1215492 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1600190 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 1675378 3777580 ~ 3778183 (+) False LOC122328138
XR_006247632.1 other downstream 277052 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 346420 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 389812 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 734291 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 780931 6238287 ~ 6239357 (+) False npb

Expression Profile