RNA id: TU221416


Basic Information

Item Value
RNA id TU221416
length 1243
lncRNA type sense_over
GC content 0.35
exon number 2
gene id LOC122327529
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5103493 ~ 5107424 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAATTTCATCGAGCCCAAATTGTGTGTCGTCCGGCTGGGAAGTGAACACTTCAAGCGTGAACAGAAATGAGGATGCCGGCATTACAGAACATCAGCCGACTTCAGACCTCATCCACTGCTGCGGTTTTACTGAAGCTGTGATCCGATTGGCTCTCTCCGCTCTGGTGGGCGTGGCTGCTGTTGCCGTGCTGGTTTATGACGTCAGATCCACAAGAAGCGAGCTGAATGGGACAGAAGAGGCTGGATATCTCTACGAGACACACGGAGTAAAAGCagacatacagtataaacagAGGTTGAGTTGCAGATATATCCAGATGTAAAGCAAAACACGCATTAATGCTCTGTTCTTTACACAGCTGTTCATTAACAGATCATTTAGGCACTCATTGGTCGTTTATTGATTGTATGACTTTGCACAATCTAGTAAATACATGCCTGTAAACATAATTTCTATGAActaaataataagcagcaacaCAAATTATGACATGGAATTAtctcaaaagcattttttggggGAATTAGTGGTTTTCAGCTGATTTTTACATAAACGTTTAAACCTACTAATATAAACTACTAATATTTTGTCTTGcactataacaaaaaaatccacAAGAAAAGTAAAAAGGGTACATAAGAATTAGTTTGcagacaaatatatacatacagtatatttacatttacattggaTATTACAAtgctattttacaaaaatatactttgCAGACAAGCatgattaatgtattttatattgtattaaaccTTCAAGGATGAGCATATATTAATCGTCTtaacagcattattttattttcatgttttgacaTCACATCtacattttaattgctttttcaaGCACCATAAAAAAGGTAAACTTGCCTATATGAATGTGAAATTCacctaaaatatgaaataataataatgaagtaaTACTGTAAGTACCGATATGAAAATCAACACTGCATCTCGCacaacataaaaacagcatgtcagtcaattttgatttcacattCCACTCCACAGAAAGATATTTATTGGgagaaaagatttaaaatgttcttcacatttctgttttaggAGGATTAACAAATATTCGGTGGCGTCACTGTGAATAAGCACTTTTGTTAGAGTAGTAACAGCGTTTGGTAATTGTGTTAAAACTAACTGCTTtcttaaaagctgaaatgtatTGAGATCAAATGTTATATGATGCCACAATGGAGTCTTATTGAATTAAAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221409 lncRNA upstream 31187 5073993 ~ 5074628 (+) True G149641
TU221389 lncRNA upstream 35815 4973734 ~ 5070000 (+) True G149627
TU221390 lncRNA upstream 106841 4992011 ~ 4998974 (+) False LOC122328161
TU221384 lncRNA upstream 123629 4944699 ~ 4982186 (+) True G149624
TU221358 lncRNA upstream 303738 4798640 ~ 4802077 (+) True G149615
TU221458 lncRNA downstream 95633 5203038 ~ 5204364 (+) False LOC122327380
TU221540 lncRNA downstream 329432 5436837 ~ 5438435 (+) True G149720
TU221542 lncRNA downstream 348168 5455573 ~ 5457344 (+) False LOC122327428
TU221556 lncRNA downstream 378936 5486341 ~ 5494990 (+) True G149729
TU221564 lncRNA downstream 424460 5531865 ~ 5532831 (+) True G149733
XM_043223870.1 mRNA upstream 858 5087434 ~ 5104957 (+) True LOC122328165
XM_043223001.1 mRNA upstream 52611 5043904 ~ 5053204 (+) False LOC122327554
XM_043223000.1 mRNA upstream 52612 5043904 ~ 5053203 (+) True LOC122327554
XM_043222914.1 mRNA upstream 63714 5039894 ~ 5042101 (+) True LOC122327500
XM_043223869.1 mRNA upstream 102140 5002735 ~ 5003675 (+) True LOC122328162
XM_043222969.1 mRNA downstream 3686 5111091 ~ 5115020 (+) False LOC122327536
XM_043222968.1 mRNA downstream 3692 5111097 ~ 5115020 (+) True LOC122327536
XM_043222928.1 mRNA downstream 16638 5124043 ~ 5126458 (+) True LOC122327510
XM_043222929.1 mRNA downstream 16638 5124043 ~ 5126458 (+) False LOC122327510
XM_043222736.1 mRNA downstream 19939 5127344 ~ 5134945 (+) True LOC122327397
TU221415 other upstream 1379 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 389863 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 867746 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1252444 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 1327632 3777580 ~ 3778183 (+) False LOC122328138
TU221516 other downstream 345760 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 627003 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 696371 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 739763 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 1084242 6191647 ~ 6192659 (+) True G149895

Expression Profile