RNA id: XM_043222736.1


Basic Information

Item Value
RNA id XM_043222736.1
length 1971
RNA type mRNA
GC content 0.39
exon number 13
gene id LOC122327397
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5127344 ~ 5134945 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGACGTTTTTTGCGTCACTTCCCGAAAACCACAACTTTCACGCgatcgctcgctcgctcgcgcGCCTTTAAAAAATGCGTAGCTTATTTCAAATCAATATGTCAACTATAATGTACATTAATTGCTCTCTGTCGATGTAAACGATGGCCTTGGTTCGTAAACAATTCGTGCTGTCGTGTGGCTCTCGCTGAAACAAACgagtatttataatataaacgATATCCATCGTAATCATATGTTGCTGAATTATTAAACACCATGAAGAGCACGAGCAAAATCGGCCTGTTTTTGATAATAACGTGTGgagTGTTTTATGCTGAAACCGATGAAGTGAAGTCGGTGATGGAGGGAGAGTCTGTCACTCTAAACCTCGATCTTTCTAAAATACAGGGTCTTCACCTGCTCCTGTGGTGGTTTGGAGATAAGGGTTACACAGTTGCTCAGATTGACGGAATAGAAATCTCATATGAAGATTATGAGTTATTTAGAGACCGACTGGAGCTGGATCAGACTGGATCTCTCACCATCACAAACACCAGAACCAAGCACTCTGGACTCTATAAAGCAGAAATCAACCACAGCACCGGAACTCTGTATATTAAGTTCAGTGTTACCGTCTACgAGTCTCCATCTGTTATAGATGCTGGTGAAGCAGAAAGGCAGCTCATGTCGGTGAAGGAGGGAGTTTCTGTAACTCTAAATATTCCTCAACTACAAGGAAACGAGCTGATAGTGTGGAGGTCTGGAGATGAAGGAAAACTCGTAGCTAAACTTGATAAAGAGACCAAAAGCTCACCATTATATTATgatgagagattcagagacagactggaACTGGAAAAGACCGGATCTCTGATCATCACCAACACCAGAACCACAGATTCTGGACTTTATAGAGTGAAGATCAGCAGCAACAAACAGACCTTATACAAGAGATTCACTGTCACTGTCAACGAACCAGGTCTTTCTTCAGCTGCTGTAGCAGGGATCGTTCTTTCTCTGCTGCTAACGGCTTTAGCTGCAGCTACTggtggtttattttatttacgcAAGAAATCTGAACTAGACAATCTAAAGTCGGAAATCTCGAAACGACAAACTGAAACATTGGAGATCTCTGAAAAACTAAAGGAAATGTCGAGGATCTctgaaaaactgaatgaaatgtCGGATGACTCTGAACGACTAAAGGATCTGTCAAAACACTGTGAAAAAGAAATGCACAAGATCTCTGACAGACTAAAGGAAATGTCTTCGAAAACAAAAGAACAGATCTCTGAACAAGAAACACCTTTGTCTGATGCCGTGATCATGGAATCAGCTGGAAAAGGAATGAATGAAGAAGCACCTGTTTTAAGTGACTGAGCAGCAGACAGATTCCGATTCCAATGATGAGTGCCACGCCATTTTCACGTAGAGCGTTGGTTTAGTATGTTGAGTCTCTTTTGCTTTTCCCTCTCAACTAAGCCTCGGGGAGCCTTCacactacagtaaaaaaaatgtgaaaactgttgaaaaagcattaatattactctaaattaatatattacatatacgtAATCTTATCCTATGTGTGAGTtgctgttttaattataaaaagcattaatattactctaaattaatatattacatatacgtAATCTTATCCTATGTGTGAGttgctgttttaattattcatttttttttttaatttcaaatacttGTTTTTCGTGCctaatttataaatacatagttttttttatgatactGCAAATATCACTCGATAGCTGCTGCGCCCGTCAgataccaaaaaaaacaaaacctcacGGTGCGTGGCAGTGCTGTGATCAGGcaaagaaacagagacaacaGAACAAACAGAGAGCAGAATGGATACGTGTGAGATAAAGCATGTATGTACaactgtattcattttatgggactttatttaaagtgaaagtaaaataaatatgaaaacgcATATCTCTAA

Function

GO:

id name namespace
GO:0042612 MHC class I protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221416 lncRNA upstream 19939 5105815 ~ 5107405 (+) False LOC122327529
TU221409 lncRNA upstream 52716 5073993 ~ 5074628 (+) True G149641
TU221389 lncRNA upstream 57344 4973734 ~ 5070000 (+) True G149627
TU221390 lncRNA upstream 128370 4992011 ~ 4998974 (+) False LOC122328161
TU221384 lncRNA upstream 145158 4944699 ~ 4982186 (+) True G149624
TU221458 lncRNA downstream 68093 5203038 ~ 5204364 (+) False LOC122327380
TU221540 lncRNA downstream 301892 5436837 ~ 5438435 (+) True G149720
TU221542 lncRNA downstream 320628 5455573 ~ 5457344 (+) False LOC122327428
TU221556 lncRNA downstream 351396 5486341 ~ 5494990 (+) True G149729
TU221564 lncRNA downstream 396920 5531865 ~ 5532831 (+) True G149733
XM_043222928.1 mRNA upstream 886 5124043 ~ 5126458 (+) True LOC122327510
XM_043222929.1 mRNA upstream 886 5124043 ~ 5126458 (+) False LOC122327510
XM_043222969.1 mRNA upstream 12324 5111091 ~ 5115020 (+) False LOC122327536
XM_043222968.1 mRNA upstream 12324 5111097 ~ 5115020 (+) True LOC122327536
XM_043222956.1 mRNA upstream 19920 5103493 ~ 5107424 (+) True LOC122327529
XM_043222830.1 mRNA downstream 135 5135080 ~ 5140253 (+) True LOC122327451
XM_043222831.1 mRNA downstream 135 5135080 ~ 5140253 (+) False LOC122327451
XM_043222833.1 mRNA downstream 135 5135080 ~ 5140253 (+) False LOC122327451
XM_043222832.1 mRNA downstream 135 5135080 ~ 5140253 (+) False LOC122327451
XM_043222993.1 mRNA downstream 19549 5154494 ~ 5156419 (+) True LOC122327549
TU221415 other upstream 22908 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 411392 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 889275 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1273973 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 1349161 3777580 ~ 3778183 (+) False LOC122328138
TU221516 other downstream 318220 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 599463 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 668831 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 712223 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 1056702 6191647 ~ 6192659 (+) True G149895

Expression Profile