RNA id: XM_043222831.1


Basic Information

Item Value
RNA id XM_043222831.1
length 3087
RNA type mRNA
GC content 0.39
exon number 6
gene id LOC122327451
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5135080 ~ 5140253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTAACATGATTCGTATTCTTTTGGTTtctataaacaatatttttaacaatttcaaATTCTggtaaccaaaaaaaatataaaaacactattGGAGTCAAAGGGGACCATAAACTTTCTGACTATGAgggttcttcaaaatatcttaaaacatagtaaaaaaatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaattacaGTTAACTACTGTAATATgcactgcattgtgggtaatttctatacatttcaTACTACTTTACTGTATCTGTGAATTTTCAGTACTTTACTGTTTACCtgtcacataaaacaaaatctcctgatagaaaaacataaaaacaacatagcCCAACATGCTTCATGGATAaatcacaaacacattaaaactttgaattaaaatatcaaatagcCTCaggaatttaaaatgaatttatatctATCAGATGAACATTTAATACTTCTGAATCTCCTTCCAGAAGGCATTACTTCAAAGAGAACCTTCAAGGATGGGAATCATTTCCTACAACACACATCTTTCCTAAGTCCTAAGTAGGAACTGCAGATCGGTCCTATTTCTTAGAGTGATGAGTAccaacataaaaaagaaaaaaacttaaaatagtCTCAATAAAAGTAGTATAAAAAGTTCTCAATACACAGAAATAGTTACATTTCCTAAGTATGTACGTTCTTTGATTCGTATAACCCAGTTGCTGGGGTTAATCTCACTGACCATTAAAACTATACACCCCTCCCTCTCCCTCTGAGGAAGTAACCCAAAGCACTGTTGGGGTAAAGTCGTAACACTGGCTTGTCATTCTCCTCGGGAGAGAGTGAGTCCTCATAACGTTTGAATATGTTCTATTCCATCTCCAAATCTTTTATTGTGCTCTTTTATTGTATCGTTTCTAATTAATTTGGATGCTGAAATATTTTCTCGAAACTCtactgtttgtttatgaacAGGTTATAAAGTCACAGCATCGGCTTCTTTCAGCTACTGGTAAAATTCGAGGCAGCTGTCTGAAGTTCGCAGTTTCCCATCGCCGGCTATGATTTCAGCAACTcgcttaaaaatgacaaaatagtCTAATAGTGTGTCTCAGTGAGGAGTGGACCTCCAAACCACATCCAAAGAAAATAAGGGTTCATCCTTAATTTCTCCCAGCCTCATCCCTGCAGATATTCTGCAGTCTAGCTCTTCACACGAAAAACTCTGTCCCCATGCACTGTCTACTCAGCGGTAGAACATAGTCTGTAGATGCTAATCCAGGATGTggccaacaacaacaacccgaGTCCTATATTTCCAGAACAAAGGTGTGTGTACTCTCTTCTGGTACAAAGAAAAGCGTTTactgtccagcatcagtgtgcaGCTTGATCTCTTTCAACATCTGGAGTGTCTGCATGATTCCTACAGCTGTGTGTTGAACAATCTCTGTCAGCCATGTTCAGGCATGTCTGTACTGCGTTATATCTATATCAGCGTGTCCCATTGATAGACAGTGGCGGCCTGCAGCAATCTGTCCATATTCAGCTGACAAATACCTTTCTTAACGCGTGCAGACGAGCAGAAGCTCAGTATCTGGTGTTCTTGTCACTGAAAACGGTTTGCTCTCAAAGCAGTGCATTTAACGTACAAATTGTGTGGGAGGTGTTTCTGGAGCAGTTTATTCACACTTACTGCAGAGCTTCACTAAACCACAACAGACCGACGGCACTCTCCAGCTCGCCTGCCGCTTTCAGCTCTCAAAAACTTCATAGAacttttctgttgtgttttgttgtaaatgtcGCCTTTTCAGAACTCAGGCCTGTTGTTATTTGAAGAAAATGCTTGAGAGTTTAATTTTTATCGGTTTGTGCTCATGGAGTCTGGCTGgtgtgtttgtggATGATGGAGTGAAGTCGGTGTCtgtgatggagggagattctGTCACTCTAAACATCAACGATCATGATATGCACAAAGTTGAAGAAATACTGTTCAAACACAACAGCGTTCTCATTGCTCAAATCAACAGAATGAAGAAGAATGAGTGCaggttttttaataatactgcTTCtcagagattcagagacagactgaagctggaccagactggatctctgatcATCACAGACACCagaaccacagactctggactttataATGTCTCCAGCCGTAAAACAGCAACAAGGCTCACAATCAGTCTTACTGTCTACGCTCTCTTCTTGCCTGTCCCTGTCATCACAAGAGActgttcttcatcatcatcttcctcctcaTGTTGTTCACTGCTGTGTTCGGTGGTGAATGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcattaatgtgtctgatctcagcatcagtctctctctacctctggaggtggaacatcaggataaaaacatctacagctgtgtgatcaacaaccccatcagaaaccagaccagACATCTGGACATCAGTGAAGTCTGTCAGACAAGTTCAGAACATGACCCAACCATATTGAACATTGTGCTgatctctgctgctgctgctgctggattTCTGTTGATTTTTGCTGCAGTCATGATCTTCTGCACCTGCAAGAAACATAAAGAAGTAGAAGATCAGACATGTACAGAAGAGATCATTTACTCCGAAACAACATTCTATAAAAGAAGAGGACAGAATTCGAGATCTAAAAAGGAGGAAGAGGTGGTGTATGCAGGGATTGCTGTGAAACAATGATTCTGACTGCTGTTCTTGTGAAATGACCGATGCTGATTGACATCTAGTCTTTTTATGTTATCTTAAAATATTGGAGGCAGAGCAATCAGTCTTACTAACAGAAGCTCTGCATTGCAACATAATGACATTGATGAGActacagataataaaaataataatatacaaataattacaaaattgaCAATGTGCAATATAGCACaaacacaatatacaaaataaactcTTTAGTGTGAACAGGTATGTCATGtacaaatttgaaatgtaaataagtttgtgtgttaaataaatacctATATAGTGTGTGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221416 lncRNA upstream 27675 5105815 ~ 5107405 (+) False LOC122327529
TU221409 lncRNA upstream 60452 5073993 ~ 5074628 (+) True G149641
TU221389 lncRNA upstream 65080 4973734 ~ 5070000 (+) True G149627
TU221390 lncRNA upstream 136106 4992011 ~ 4998974 (+) False LOC122328161
TU221384 lncRNA upstream 152894 4944699 ~ 4982186 (+) True G149624
TU221458 lncRNA downstream 62785 5203038 ~ 5204364 (+) False LOC122327380
TU221540 lncRNA downstream 296584 5436837 ~ 5438435 (+) True G149720
TU221542 lncRNA downstream 315320 5455573 ~ 5457344 (+) False LOC122327428
TU221556 lncRNA downstream 346088 5486341 ~ 5494990 (+) True G149729
TU221564 lncRNA downstream 391612 5531865 ~ 5532831 (+) True G149733
XM_043222736.1 mRNA upstream 135 5127344 ~ 5134945 (+) True LOC122327397
XM_043222737.1 mRNA upstream 135 5127739 ~ 5134945 (+) False LOC122327397
XM_043222928.1 mRNA upstream 8622 5124043 ~ 5126458 (+) True LOC122327510
XM_043222929.1 mRNA upstream 8622 5124043 ~ 5126458 (+) False LOC122327510
XM_043222968.1 mRNA upstream 20060 5111097 ~ 5115020 (+) True LOC122327536
XM_043222993.1 mRNA downstream 14241 5154494 ~ 5156419 (+) True LOC122327549
XM_043222721.1 mRNA downstream 18127 5158380 ~ 5161143 (+) False LOC122327387
XM_043222720.1 mRNA downstream 18130 5158383 ~ 5161143 (+) True LOC122327387
XM_043222907.1 mRNA downstream 21548 5161801 ~ 5171510 (+) True si:dkey-182g1.2
XM_043222908.1 mRNA downstream 22817 5163070 ~ 5171510 (+) False si:dkey-182g1.2
TU221415 other upstream 30644 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 419128 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 897011 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1281709 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 1356897 3777580 ~ 3778183 (+) False LOC122328138
TU221516 other downstream 312912 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 594155 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 663523 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 706915 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 1051394 6191647 ~ 6192659 (+) True G149895

Expression Profile