LOC122327447 (LOC107741386,LOC107568440)


Basic Information

Item Value
gene id LOC122327447
gene name LOC107741386,LOC107568440
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4213226 ~ 4240787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU220805
cagaaatctaaaataaaatgcttcatGTTATTGTTTTGATCCACTTGTGTTTGTGGAGTTCAGCCGgtgtgtttggtgtTCATGCATTGGAGTCAGTGTCGGTtctggagggagattcagtctcTCTAGACTCTGGTTTAACTAAAATAACAGATGAAGATCTTATTACGTGGAAGTTTGGAGCTGAAAACACTTTAATAGCTAAAATCGATGTAATGGTCGGCAGTGCTACTGTATATGATCATGTTCTTGATGAGAGATTTAGAGACAGACTGAAGGTGGATCatcaaactggatctctgaccatcactaACATCTCAACTCTACACACTGGAGAATATCAACTAGAGACCAGCAGTGTGAGAAAGAGCTTCAGTGTCTCTGTCTACG
>XM_043222820.1
TCTTCTATTTCTACACAGTCTGTTATcagaaatctaaaataaaatgcttcatGTTATTGTTTTGATCCACTTGTGTTTGTGGAGTTCAGCCGgtgtgtttggtgtTCATGCATTGGAGTCAGTGTCGGTtctggagggagattcagtctcTCTAGACTCTGGTTTAACTAAAATAACAGATGAAGATCTTATTACGTGGAAGTTTGGAGCTGAAAACACTTTAATAGCTAAAATCGATGTAATGGTCGGCAGTGCTACTGTATATGATCATGTTCTTGATGAGAGATTTAGAGACAGACTGAAGGTGGATCatcaaactggatctctgaccatcactaACATCTCAACTCTACACACTGGAGAATATCAACTAGAGACCAGCAGTGTGAGAAAGAGCTTCAGTGTCTCTGTCTACGCTtgtcttcctgttcctgtcatcAGCAGTAACTCTTCAAACtgttcttcatcttcatcatcttcatcatcttgtTCATTGTTGTGTTCGGCGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAGCTCTGTCAGCCATGTTCAGACATACAGAAATCAccagatatacagtatatatatattctgatagCACTGGTTTCTGCTGGATTTCTGTTGATTGTCGGGATCTTCTGCATCTACAGGAAATGCAGAAACACTGATCAAGATGCTGAGACGGATGTAAAAGAGGTCACTTATGCCGAACCAGCGTTCTACAAAAGAAATGCACAGAAAACCaatGTTAAAGAAGATGAAGTGGTGTATGCAGGTGTCGTCACTAGAAGATAATCAAACTTTAGTCAGTGTAAGGACCGGTGAGAATGACCACATGTAGATTAAACATTGTCgctaaaaagtacatttttattttcagctatTTCTGCTTTAACTTTGccctttgcattgcattgaagtgttacattaataaaaagtgttacattaataaaaagctCTGCTAAAAATTGCATGTAGTATAAAATCTTGTTGTGTGAACCTAATATTAAAACTCTGCAAGCAccaaatgcacataaaaatcaGCACTGCCGAGtatataaaaattgtactttATAAGTAATGCACTGTTTAAGAACACAACATGGCTTTGTGTGACCATCAGTTTAAAAGGCTGcacattaattatataaatatacagtctGGCATGTTTTGAGTATCTAGAAGAGCTCATGATCCACTTAATAGTGCTTCACATAGACAAGTGCACTTGGTAATTATTAGATATAAATCTATCATCAACAAAACTTTTTGGTCTCCCTTTGGTTTTCTAGTAAAAGAAAAGTCTGATGGTTTAA
>XM_043222822.1
TTTCTACACAGTCTGTTATcagaaatctaaaataaaatgcttcatGTTATTGTTTTGATCCACTTGTGTTTGTGGAGTTCAGCCGgtgtgtttggtgtTCATGCATTGGAGTCAGTGTCGGTtctggagggagattcagtctcTCTAGACTCTGGTTTAACTAAAATAACAGATGAAGATCTTATTACGTGGAAGTTTGGAGCTGAAAACACTTTAATAGCTAAAATCGATGTAATGGTCGGCAGTGCTACTGTATATGATCATGTTCTTGATGAGAGATTTAGAGACAGACTGAAGGTGGATCatcaaactggatctctgaccatcactaACATCTCAACTCTACACACTGGAGAATATCAACTAGAGACCAGCAGTGTGAGAAAGAGCTTCAGTGTCTCTGTCTACGCTtgtcttcctgttcctgtcatcAGCAGTAACTCTTCAAACtgttcttcatcttcatcatcttcatcatcttgtTCATTGTTGTGTTCGGCGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAGCTCTGTCAGCCATGTTCAGCTGAGACGGATGTAAAAGAGGTCACTTATGCCGAACCAGCGTTCTACAAAAGAAATGCACAGAAAACCaatGTTAAAGAAGATGAAGTGGTGTATGCAGGTGTCGTCACTAGAAGATAATCAAACTTTAGTCAGTGTAAGGACCGGTGAGAATGACCACATGTAGATTAAACATTGTCgctaaaaagtacatttttattttcagctatTTCTGCTTTAACTTTGccctttgcattgcattgaagtgttacattaataaaaagtgttacattaataaaaagctCTGCTAAAAATTGCATGTAGTATAAAATCTTGTTGTGTGAACCTAATATTAAAACTCTGCAAGCAccaaatgcacataaaaatcaGCACTGCCGAGtatataaaaattgtactttATAAGTAATGCACTGTTTAAGAACACAACATGGCTTTGTGTGACCATCAGTTTAAAAGGCTGcacattaattatataaatatacagtctGGCATGTTTTGAGTATCTAGAAGAGCTCATGATCCACTTAATAGTGCTTCACATAGACAAGTGCACTTGGTAATTATTAGATATAAATCTATCATCAACAAAACTTTTTGGTCTCCCTTTGGTTTTCTAGTAAAAGAAAAGTCTGATGGTTTAA
>XM_043222823.1
ACTGAAATAACAGATGAAGATCTGATTACGTGGAAGTTTGGAGCTGAAAACACTTTAATAGCTCAAATCTTTGTAATGGCCAACAGCATGACTGTATATGATCATGTTCTTGATGgaagattcagagacagactaaaactgaacaaacaaaCTGGATCTCTGATCATCTCTAACATCTCAACTCTACACACTGGAGAATATCAACTACAGACCAGCAGTGTGAGAAAGAGCTTCAGTGTCTCTGTCTACGCTtgtcttcctgttcctgtcatcAGCAGTAACTCTTCAAACtgttcttcatcttcatcatcttcatcatcttgtTCATTGTTGTGTTCGGCGGTGAACGtgagtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAGCTCTGTCAGCCATGTTCAGACATACAGAAATCAccagatatacagtatatatatattctgatagCACTGGTTTCTGCTGGATTTCTGTTGATTGTCGGGATCTTCTGCATCTACAGGAAATGCAGAAACACTGATCAAGATGCTGAGACGGATGTAAAAGAGGTCACTTATGCCGAACCAGCGTTCTACAAAAGAAATGCACAGAAAACCaatGTTAAAGAAGATGAAGTGGTGTATGCAGGTGTCGTCACTAGAAGATAATCAAACTTTAGTCAGTGTAAGGACCGGTGAGAATGACCACATGTAGATTAAACATTGTCgctaaaaagtacatttttattttcagctatTTCTGCTTTAACTTTGccctttgcattgcattgaagtgttacattaataaaaagtgttacattaataaaaagctCTGCTAAAAATTGCATGTAGTATAAAATCTTGTTGTGTGAACCTAATATTAAAACTCTGCAAGCAccaaatgcacataaaaatcaGCACTGCCGAGtatataaaaattgtactttATAAGTAATGCACTGTTTAAGAACACAACATGGCTTTGTGTGACCATCAGTTTAAAAGGCTGcacattaattatataaatatacagtctGGCATGTTTTGAGTATCTAGAAGAGCTCATGATCCACTTAATAGTGCTTCACATAGACAAGTGCACTTGGTAATTATTAGATATAAATCTATCATCAACAAAACTTTTTGGTCTCCCTTTGGTTTTCTAGTAAAAGAAAAGTCTGATGGTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220805 False 390 TUCP 0.40 2 4237454 4238069
XM_043222820.1 True 1476 mRNA 0.38 6 4237428 4240787
XM_043222822.1 False 1346 mRNA 0.38 5 4237435 4240787
XM_043222823.1 False 1310 mRNA 0.37 5 4213226 4240787

Neighbor

gene id symbol gene type direction distance location
LOC122327454 NA coding upstream 18375 4191133 ~ 4194851 (+)
LOC122327476 LOC107704490,LOC107698560 coding upstream 27534 4154246 ~ 4185692 (+)
LOC122327514 NA coding upstream 59900 4147781 ~ 4153326 (+)
LOC122327518 NA coding upstream 68695 4140157 ~ 4144531 (+)
LOC122327450 NA coding upstream 82195 4124031 ~ 4131031 (+)
LOC122327509 NA coding downstream 39536 4280323 ~ 4287985 (+)
LOC122328151 NA coding downstream 65715 4306502 ~ 4308328 (+)
rnasel2 NA coding downstream 77437 4318224 ~ 4319380 (+)
LOC122327422 NA coding downstream 88409 4329196 ~ 4438622 (+)
LOC122327472 LOC107698560 coding downstream 115756 4356543 ~ 4361119 (+)
G149235 LOC107687330,LOC107690511,LOC107709401 non-coding upstream 24387 4187365 ~ 4188839 (+)
LOC122327587 NA non-coding upstream 36378 4175209 ~ 4176848 (+)
G149240 NA non-coding upstream 91618 4119531 ~ 4121608 (+)
G149230 NA non-coding upstream 132399 4080283 ~ 4080827 (+)
G149229 NA non-coding upstream 133011 4079643 ~ 4080215 (+)
G149195 NA non-coding downstream 27712 4268499 ~ 4275519 (+)
G149266 NA non-coding downstream 41724 4282511 ~ 4377347 (+)
G149258 NA non-coding downstream 57918 4298705 ~ 4300899 (+)
LOC122327592 LOC107737287 non-coding downstream 67662 4308449 ~ 4312101 (+)
G149274 LOC107698552,LOC107687331,LOC107566424,LOC107710492,LOC107755804,LOC107741386,LOC107580752,LOC107711595,LOC107723932 non-coding downstream 90115 4330902 ~ 4503306 (+)
LOC122327446 NA other upstream 153853 4053527 ~ 4059373 (+)
G149157 LOC107561598,LOC107717161,LOC107549384,LOC107742789,LOC107704500 other upstream 359855 3852063 ~ 3853371 (+)
LOC122328138 NA other upstream 433550 3777580 ~ 3779676 (+)
G148992 NA other upstream 617926 3592661 ~ 3595300 (+)
LOC122327325 NA other upstream 620853 3297362 ~ 3592373 (+)
LOC122327552 LOC107568440,LOC107698560 other downstream 178776 4419563 ~ 4421001 (+)
LOC122327412 LOC107698560 other downstream 457405 4698192 ~ 4730700 (+)
LOC122327517 NA other downstream 472075 4712862 ~ 4716003 (+)
LOC122328161 NA other downstream 751224 4992011 ~ 4998974 (+)
LOC122327529 NA other downstream 862706 5103493 ~ 5107424 (+)

Expression


Co-expression Network