G149235 (LOC107687330,LOC107690511,LOC107709401)


Basic Information

Item Value
gene id G149235
gene name LOC107687330,LOC107690511,LOC107709401
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4187365 ~ 4188839 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU220767
CCTCCACTTCGTGCAATTCTTCATAGAGTTGAGAAAACacaggaaaataataatgaaaaataaatgtttaaaataaaacattatcagatcaattttaataatacataaacagtCCTTAAATGAGCAAATGCAAtactttaaatatcatttaaattaaagtagCCTACTGAAATAGACTAATTGTCTTTGTTGCTGTGTTCAGATAATCCACACCTAATCAATCAATGCTTGTGAAATGCAGCAGGGCATGTGATTAAATGACTCACCACTAATGACCGAATCAGCACTAAATGACTCACCAGTGATGGACACACTGAAAGTCTTTACAATGTCGCCGATGTTGATcatttttttgatgattttgcTGCTGTCGCACTTGCCGTTTCGGTTCAAGCTTTGGCTGGTTCCTGAGCTCTCGCTTTTGATGAAATTTGCTTCATAGAGTCCAATGTGTTCACGTCCGATGTTTGTGATGGTCAGGGATCCAGTCTCGTAGTCCActgtcagtctgtctctgaagaTCTCACCTTCGCCATCATACACACAACTCTTACTGGGATCTCCGTTAATCAGGGCAATGAGGGTGTCGTTAAAGTACCACAGCATCTTGTCACGGCCTTGCTTGACAACATCGCTTTGTAGAGTGACATGATCTCTCTCCTTCACTGACACCAAGTTCAAACCAACCACAGCTCAACGACAAGAGCAAGAGTAAACGAAACAGATGTTTTCATTGCTGCTTCTTCAGGAAGTATAAACTGAATCAAGACGATTTGACTACTTTTCTAACCGCGATCTTCTTCTTTTCAACGATTAGAAAGTAGTTGATCCTAACCTGTTTTTGaaatcagaaaaacagaaaagcgtatagaaagaaaagaaagagttatCAAAGTGGATGAATAACATGTTGGTCGAGTTGTTCTTGGTTACATG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107687330, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220767 True 936 lncRNA 0.39 2 4187365 4188839

Neighbor

gene id symbol gene type direction distance location
LOC122327476 LOC107704490,LOC107698560 coding upstream 1673 4154246 ~ 4185692 (+)
LOC122327514 NA coding upstream 34039 4147781 ~ 4153326 (+)
LOC122327518 NA coding upstream 42834 4140157 ~ 4144531 (+)
LOC122327450 NA coding upstream 56334 4124031 ~ 4131031 (+)
LOC122327474 NA coding upstream 70857 4112643 ~ 4116508 (+)
LOC122327454 NA coding downstream 2294 4191133 ~ 4194851 (+)
LOC122327509 NA coding downstream 91484 4280323 ~ 4287985 (+)
LOC122328151 NA coding downstream 117663 4306502 ~ 4308328 (+)
rnasel2 NA coding downstream 129385 4318224 ~ 4319380 (+)
LOC122327422 NA coding downstream 140357 4329196 ~ 4438622 (+)
LOC122327587 NA non-coding upstream 10517 4175209 ~ 4176848 (+)
G149240 NA non-coding upstream 65757 4119531 ~ 4121608 (+)
G149230 NA non-coding upstream 106538 4080283 ~ 4080827 (+)
G149229 NA non-coding upstream 107150 4079643 ~ 4080215 (+)
G149219 NA non-coding upstream 143406 4042503 ~ 4043959 (+)
G149249 NA non-coding downstream 2404 4191243 ~ 4213234 (+)
G149250 LOC107574539,LOC107574896 non-coding downstream 3001 4191840 ~ 4214625 (+)
G149238 LOC107689434 non-coding downstream 26506 4215345 ~ 4236472 (+)
G149195 NA non-coding downstream 79660 4268499 ~ 4275519 (+)
G149266 NA non-coding downstream 93672 4282511 ~ 4377347 (+)
LOC122327446 NA other upstream 127992 4053527 ~ 4059373 (+)
G149157 LOC107561598,LOC107717161,LOC107549384,LOC107742789,LOC107704500 other upstream 333994 3852063 ~ 3853371 (+)
LOC122328138 NA other upstream 407689 3777580 ~ 3779676 (+)
G148992 NA other upstream 592065 3592661 ~ 3595300 (+)
G149028 NA other upstream 612892 3571093 ~ 3574473 (+)
LOC122327447 LOC107741386,LOC107568440 other downstream 24387 4213226 ~ 4240787 (+)
LOC122327552 LOC107568440,LOC107698560 other downstream 230724 4419563 ~ 4421001 (+)
LOC122327412 LOC107698560 other downstream 509353 4698192 ~ 4730700 (+)
LOC122327517 NA other downstream 524023 4712862 ~ 4716003 (+)
LOC122328161 NA other downstream 803172 4992011 ~ 4998974 (+)

Expression


Co-expression Network