LOC122327412 (LOC107698560)


Basic Information

Item Value
gene id LOC122327412
gene name LOC107698560
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4698192 ~ 4730700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU220969
CGGAAGCACCTGATTGgtgGGTTTTGTTCACAGACACATGAAAGACTGTTCGGTGCTGAGGGAGATTCTGTTACTTTACAAACTGATGTTACTGAAATACATGAAGATGAAGACATACTGTGGTATTTTGGAGGCCAGAAATCTGCCTTAGCTAAAATCAACAGAGCGACTAAAACCTTCTTCACGTATGATGTCCCTGATGCGAGATTCAGAggcagactgaagctggacaataaaactggatctctgaccatcacgaaCATCACAACTCAGCACGCTGGAGTTTATAAACTAGAAATAAGTGGAGCAAAACTGATATCCAAAACTTTCAGTTGTTCTGTCTATGCTCATCTGCCTGTTCCTGTCATCAGCAGAAGCTCTTCACAAtgttcttcatcttcatcaaatTGTTCATTGTTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAGCTCTGTCACACGTGTTCAGGTCATGGCATACCTTTATTTCCTAAAGGGCTGATTACTGCTTCTGGATCCTTTTTGATTGTAGCTTCGGTCGTGATGTGCTGCATGTGTaagaaatggagaaaaacagGTCAGCAGACTGTGAATACAAACTATATAACTGGACAGGTTTGAACTTTGAAAATTGTTGGAAAACTATGTTTAGGGTAATGTACAGTCATACAGGACCATGACTCACCTGCTTTTGCTCGTAAGCATTCTCAGCCTGGACCTTAATGTTCACCGTCTATTCTAGTTTTGTGTCACTTGCTTGTTATCTTTGTACTGCCg
>XM_043222768.1
GattataaactattttaaaatacattatctttattttaccacaATTTTTATACAATATCACCTTTTTGGCTATTAAAGCTTTTAATGTCTCAATGTCTTAAAGAGAAATGCAGATCATGTGTTTTTGCAAACTCGTGGGAGGATTCACTTCatgttgagtttttttttttttttccagaagatAGCGTTACATCAGACAGAGAACTggcaaagaaaatgttttacatgcttcttttgttctgtttgtgcCGGAAGCACCTGATTGgtgGGTTTTGTTCACAGACACATGAAAGACTGTTCGGTGCTGAGGGAGATTCTGTTACTTTACAAACTGATGTTACTGAAATACATGAAGATGAAGACATACTGTGGTATTTTGGAGGCCAGAAATCTGCCTTAGCTAAAATCAACAGAGCGACTAAAACCTTCTTCACGTATGATGTCCCTGATGCGAGATTCAGAggcagactgaagctggacaataaaactggatctctgaccatcacgaaCATCACAACTCAGCACGCTGGAGTTTATAAACTAGAAATAAGTGGAGCAAAACTGATATCCAAAACTTTCAGTTGTTCTGTCTATGCTCATCTGCCTGTTCCTGTCATCAGCAGAAGCTCTTCACAAtgttcttcatcttcatcaaatTGTTCATTGTTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAGCTCTGTCACACGTGTTCAGcatCGGATGAAAAGTCTGCTTCACATCACATGTGGACCTCTGCTGCTGTTGGGTCTCTGTTGATTTTAGCTGCAGTCGGGATCGGCTGCATCTACAGGAAACACAGAAAAACGGAAGgtGCTGTTGATGATAATGCAGCCGTTCAAACTTACAAAGACGAAATCACTTACACTGATCCCACATTCTGCAAACGAAATGCACAAAAACTAacaACCACAGAGAACACTAACGTGGAGTATGCGCTAGCCTGTATGAGATGAAGCTTCGGTGTGTTCAGTCTCTTCACTGATGAGCGTCTTTGAGTATTTCTGGTTTCAGTTTGTGATCACTTATGTTTACAAGTCGTGGACAGTTTTTGGGATTGCTGAGAAGCCACACAGTCATGCCTCTAAACTTAGCTGTCAATTCTTCAGAagtacacacatttaaatacatgataTTGGTATaaagtttacacacacactggaaGCGCCAGTTTGGGAATCAAAGTAAATCTGCTTTGGCAAGTTCTAAAGTCTGTCCCTCGAGGTCCACTTTTGCTCAAACCTTGAACAAACTCACTTTTCTGTAAATTTCTTGCAATCCTGGAGCTTGTTTGATTTggagttggagctaaactttgctGGAAAGTGGACCTCAAGGAGGTGAAAAGATGAAATTCATAGTTTGCTTACTACCATGCAACAAAACCCAACAACAATACAAGAACTTAAACAGCACAGCCAAAAtctatttacaattaaaatgataatgaattatttttttatgcaaaggtagaatattaaacacaaaactttGTAATTATCAGTGCCTTATACAATTTAGATTGTGGCAAGGAAGCTTTAGAGTATTACACATGAAAATTTTAGTAGTGTCACAGAAAAAGCATTAAACAGAAAAGCATTGATTTTGTGCTGGAAAGTTATAATTTCCTCACCCTCATCTTCCAAATTCATTTAACCAATCATGCTTTTCTGTAAGAGCTTCTCAGTTGTGGAATACACAATAGAAAATTGAACTAAGAAACACTGATTGTTGTCATATTGTTAGCGTTTTTTGTTTagcctttctgatatttttttaattcctccAAAGGACTGCAGCTGAAAATTAGATGATTGGGTAAACAGTGGCACATTTACAGAAATGGCGATTAACATTTGgccttataaaataaataaatgaaaatgtaataatgacatattaaataaatactttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220969 False 942 lncRNA 0.42 4 4698441 4730700
XM_043222768.1 True 2104 mRNA 0.38 6 4698192 4700863

Neighbor

gene id symbol gene type direction distance location
LOC122327427 NA coding upstream 9067 4685684 ~ 4689125 (+)
LOC122327464 NA coding upstream 16440 4678803 ~ 4681752 (+)
LOC122327417 NA coding upstream 27070 4668745 ~ 4671122 (+)
LOC122328158 LOC107568440 coding upstream 72093 4624627 ~ 4626099 (+)
LOC122327527 NA coding upstream 74843 4616753 ~ 4623349 (+)
LOC122327502 cela1,zgc:92041,LOC107721235,LOC107570146,LOC107727187,LOC107566436 coding downstream 201744 4932444 ~ 4939804 (+)
LOC122328162 NA coding downstream 272035 5002735 ~ 5003675 (+)
LOC122327500 cela1,zgc:92041,LOC107727187,LOC107566436,LOC107721235,LOC107570146 coding downstream 309194 5039894 ~ 5042101 (+)
LOC122327554 LOC107694397,LOC107570142,LOC107566360 coding downstream 313204 5043904 ~ 5053204 (+)
LOC122328165 NA coding downstream 356734 5087434 ~ 5104957 (+)
G149367 NA non-coding upstream 5823 4691000 ~ 4692369 (+)
G149349 NA non-coding upstream 23184 4635991 ~ 4675008 (+)
G149355 NA non-coding upstream 26956 4661793 ~ 4671236 (+)
LOC122327603 NA non-coding upstream 34849 4661741 ~ 4663343 (+)
G149347 NA non-coding upstream 47828 4633242 ~ 4650364 (+)
G149383 NA non-coding downstream 7357 4738057 ~ 4739303 (+)
G149392 NA non-coding downstream 13208 4743908 ~ 4765814 (+)
G149391 NA non-coding downstream 35241 4765941 ~ 4772281 (+)
G149400 gpd1b,LOC107721242,LOC107727040,LOC107698578,LOC107566434 non-coding downstream 42776 4773476 ~ 4777181 (+)
G149615 NA non-coding downstream 67940 4798640 ~ 4802077 (+)
LOC122327552 LOC107568440,LOC107698560 other upstream 277191 4419563 ~ 4421001 (+)
LOC122327447 LOC107741386,LOC107568440 other upstream 457405 4213226 ~ 4240787 (+)
LOC122327446 NA other upstream 638819 4053527 ~ 4059373 (+)
G149157 LOC107561598,LOC107717161,LOC107549384,LOC107742789,LOC107704500 other upstream 844821 3852063 ~ 3853371 (+)
LOC122328138 NA other upstream 918516 3777580 ~ 3779676 (+)
LOC122328161 NA other downstream 261311 4992011 ~ 4998974 (+)
LOC122327529 NA other downstream 372793 5103493 ~ 5107424 (+)
G149646 NA other downstream 372829 5103529 ~ 5104436 (+)
LOC122327380 NA other downstream 455490 5186190 ~ 5204364 (+)
LOC122327428 NA other downstream 722465 5453165 ~ 5457356 (+)

Expression


Co-expression Network