RNA id: XM_043222768.1


Basic Information

Item Value
RNA id XM_043222768.1
length 2104
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC122327412
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4698192 ~ 4730700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GattataaactattttaaaatacattatctttattttaccacaATTTTTATACAATATCACCTTTTTGGCTATTAAAGCTTTTAATGTCTCAATGTCTTAAAGAGAAATGCAGATCATGTGTTTTTGCAAACTCGTGGGAGGATTCACTTCatgttgagtttttttttttttttccagaagatAGCGTTACATCAGACAGAGAACTggcaaagaaaatgttttacatgcttcttttgttctgtttgtgcCGGAAGCACCTGATTGgtgGGTTTTGTTCACAGACACATGAAAGACTGTTCGGTGCTGAGGGAGATTCTGTTACTTTACAAACTGATGTTACTGAAATACATGAAGATGAAGACATACTGTGGTATTTTGGAGGCCAGAAATCTGCCTTAGCTAAAATCAACAGAGCGACTAAAACCTTCTTCACGTATGATGTCCCTGATGCGAGATTCAGAggcagactgaagctggacaataaaactggatctctgaccatcacgaaCATCACAACTCAGCACGCTGGAGTTTATAAACTAGAAATAAGTGGAGCAAAACTGATATCCAAAACTTTCAGTTGTTCTGTCTATGCTCATCTGCCTGTTCCTGTCATCAGCAGAAGCTCTTCACAAtgttcttcatcttcatcaaatTGTTCATTGTTGTGTTCGGTGGTGAACgtgggtcatgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgAACATCAGTCAGCTCTGTCACACGTGTTCAGcatCGGATGAAAAGTCTGCTTCACATCACATGTGGACCTCTGCTGCTGTTGGGTCTCTGTTGATTTTAGCTGCAGTCGGGATCGGCTGCATCTACAGGAAACACAGAAAAACGGAAGgtGCTGTTGATGATAATGCAGCCGTTCAAACTTACAAAGACGAAATCACTTACACTGATCCCACATTCTGCAAACGAAATGCACAAAAACTAacaACCACAGAGAACACTAACGTGGAGTATGCGCTAGCCTGTATGAGATGAAGCTTCGGTGTGTTCAGTCTCTTCACTGATGAGCGTCTTTGAGTATTTCTGGTTTCAGTTTGTGATCACTTATGTTTACAAGTCGTGGACAGTTTTTGGGATTGCTGAGAAGCCACACAGTCATGCCTCTAAACTTAGCTGTCAATTCTTCAGAagtacacacatttaaatacatgataTTGGTATaaagtttacacacacactggaaGCGCCAGTTTGGGAATCAAAGTAAATCTGCTTTGGCAAGTTCTAAAGTCTGTCCCTCGAGGTCCACTTTTGCTCAAACCTTGAACAAACTCACTTTTCTGTAAATTTCTTGCAATCCTGGAGCTTGTTTGATTTggagttggagctaaactttgctGGAAAGTGGACCTCAAGGAGGTGAAAAGATGAAATTCATAGTTTGCTTACTACCATGCAACAAAACCCAACAACAATACAAGAACTTAAACAGCACAGCCAAAAtctatttacaattaaaatgataatgaattatttttttatgcaaaggtagaatattaaacacaaaactttGTAATTATCAGTGCCTTATACAATTTAGATTGTGGCAAGGAAGCTTTAGAGTATTACACATGAAAATTTTAGTAGTGTCACAGAAAAAGCATTAAACAGAAAAGCATTGATTTTGTGCTGGAAAGTTATAATTTCCTCACCCTCATCTTCCAAATTCATTTAACCAATCATGCTTTTCTGTAAGAGCTTCTCAGTTGTGGAATACACAATAGAAAATTGAACTAAGAAACACTGATTGTTGTCATATTGTTAGCGTTTTTTGTTTagcctttctgatatttttttaattcctccAAAGGACTGCAGCTGAAAATTAGATGATTGGGTAAACAGTGGCACATTTACAGAAATGGCGATTAACATTTGgccttataaaataaataaatgaaaatgtaataatgacatattaaataaatactttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU220964 lncRNA upstream 5823 4691000 ~ 4692369 (+) True G149367
TU220945 lncRNA upstream 23184 4635991 ~ 4675008 (+) True G149349
TU220951 lncRNA upstream 26956 4661793 ~ 4671236 (+) True G149355
XR_006247683.1 lncRNA upstream 34849 4661741 ~ 4663343 (+) True LOC122327603
TU220942 lncRNA upstream 47828 4633242 ~ 4650364 (+) True G149347
TU220982 lncRNA downstream 37194 4738057 ~ 4739303 (+) True G149383
TU220997 lncRNA downstream 43045 4743908 ~ 4765814 (+) True G149392
TU220996 lncRNA downstream 65078 4765941 ~ 4772281 (+) True G149391
TU221009 lncRNA downstream 72613 4773476 ~ 4777181 (+) False G149400
TU221010 lncRNA downstream 72613 4773476 ~ 4777181 (+) True G149400
XM_043222784.1 mRNA upstream 9067 4685684 ~ 4689125 (+) True LOC122327427
XM_043222856.1 mRNA upstream 16440 4678808 ~ 4681752 (+) True LOC122327464
XM_043222857.1 mRNA upstream 17117 4678803 ~ 4681075 (+) False LOC122327464
XM_043222772.1 mRNA upstream 27070 4668745 ~ 4671122 (+) True LOC122327417
XM_043223865.1 mRNA upstream 72093 4624627 ~ 4626099 (+) True LOC122328158
XM_043222938.1 mRNA downstream 11999 4712862 ~ 4716003 (+) False LOC122327517
XM_043222939.1 mRNA downstream 11999 4712862 ~ 4715354 (+) False LOC122327517
XM_043223027.1 mRNA downstream 20391 4721254 ~ 4723763 (+) True LOC122327573
XM_043222915.1 mRNA downstream 231581 4932444 ~ 4939804 (+) True LOC122327502
XM_043223868.1 mRNA downstream 295368 4996231 ~ 4998482 (+) True LOC122328161
TU220805 other upstream 460123 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 844821 3852063 ~ 3853371 (+) True G149157
TU220657 other upstream 920009 3777580 ~ 3778183 (+) False LOC122328138
TU220366 other upstream 1102892 3592661 ~ 3595300 (+) True G148992
TU220368 other upstream 1105819 3590639 ~ 3592373 (+) False LOC122327325
XR_006247646.1 other downstream 11999 4712862 ~ 4715952 (+) True LOC122327517
TU221415 other downstream 402666 5103529 ~ 5104436 (+) True G149646
TU221516 other downstream 752302 5453165 ~ 5455427 (+) False LOC122327428
XR_006247632.1 other downstream 1033545 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 1102913 5803776 ~ 5806623 (+) False tusc2b

Expression Profile