RNA id: XR_006247632.1


Basic Information

Item Value
RNA id XR_006247632.1
length 2433
RNA type transcript
GC content 0.57
exon number 12
gene id LOC122327321
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5734408 ~ 5745051 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGGGTCGCGTTTCAGCCAATCAGGCTTGGTTTTACTACCGCGTGCGTTTTCTCTTGGCTGCATGGAAACCTCCTCTGCGATGCGTGAGAGGCAAAGCTCGGAAATGTTGACCACTTCACAAGTTTTCTCTTATGTATCTGTttagtattttatgtttatgttaataGTTCAGAGAAGCACTTTATTTGGAGTGTTTACGGCACTCTGCGTGCGGCACGGCGAGTGTTTGACGGACCGCGGCAGATTAATACAGCAGTCTGAGAGGGACCCTGAAGCAGCAGGCGCTTCGCTGACATGAACTTCCCGCCGAGCAAAAGACTGAAAGGCCGTCAGGTCCCAGCTGACCCCGACCCGTTCGAGGATGACATCGACTTCACGCAGGACGACCTGGAGCAGATGGACATCATGGCGTCCCAGGCCTTCGGCGGAGACGGCCAGAGCTGCTGCTCCAAGAGAGCGTTTGGGTCGGCGTTCTCTAGCGCTGATGAGCAGAGCAAAGCTCCTGCGAGATCCGGCCGGAAAACGTTTGCCATCGGAGACGGCAGCGGCGCGTTTAACAGCAAAGACGCGTTCGCAGAAGGACATTCCAGTAAAGATGGAGAAGATCTGTACTACAAGCAGTTAGAGCAGCAGCAAGCAGAGCTGAAGAAAAAGctgaaggaggtggaggaggacaTCCTGATGAAGAACGGCGAGATCCGAGTGCTGCGCGACTCCCTGAAGCAGGCCAATCAGGAGAAGGAGCGTCAGCGGCAGACCCAGCTCGCCCTGGAGAACCAGACGGCTCGCGCTCAGAGCGACAGAGAGAAGGAGCTGTCCAGGAAGGTCCAGTCGCTGCAGTCAGAGCTGCACTTTAAAGAAGCGGAGATGAATGAAATGAGAGGGAGACTTCAGAGCGCTGAGCGTGGAGGAAAGCTGCCCGGCACTCCTGCTCGAAACACCGTTCAGTCTCCTGTGAGCAGAGCCTTCATGACCAAAGAAAACATCTCCGCCTCCTTCTCTAAGAAAATATCTCCCGTCAAAAAAGCCAGTTTATCAGAAGCTCTCTCAGACAGTGAAGCGGCTCTGACGGACGGGATGCGTCCTCTGGAGGTGTTTAGTTCTTCTTCAGGCCGTGTGTTACTGACCCTGCTCCTCCAGCAGCCCCTGGACCCCAGcgctctgtctctgtgtcacCTGCTCTCCATCAGTCCTGACGCTCCGCCCAACATCCTGGCACCGCACGCGTACGTCAGCCCGGGGTCTTTGGTCACGTCCAGCTCGTCCTGCACAGAGTTCAGATGGTTTCACCGTCCTCAAGCTCGTTTCCATCAGCTGCAGAGTCTGGCCTCGTCCGCTCTGAACGCGTTAGCTCTGCATCACCCCGACAGCGCCCCGCATGCCCCCGCGTCCTCGCTCCGAGCCGCCCAGCGCTCCTGTCCCGCCGCGGTGCGCCTCCTGCCTCTGCTCAGCTTCCACATCGGCTCGTACTGTCAGTCTCTGGAGAGCTCGGCGAAGGCCTCGCTCCACGGCGGCGGCTCACTGTCAGGGGCGTCCGACTCCGGCCTGGCCTCGAGTGTGGAGGGGTCTCTCAGCGGGCCCGAGGAGCTGGCCCTGGCCGCCCTGGGAGCTCTCGGTCATGTGGTGCGCTCCAGCAGCGAGGCTCTGGAGGAGGTTCTGTGTCCCCCGGAGGACGTGAACCGGTCGCAGGCTTCGAAACATCTCCTCGGCGCCTCTGAGCACCTGAACGGGGACGCGCCGACGCAGCTGCCTCTTCTCAGGAGGATCCTGCAGCTGGCAGATCCGGCCTTCAGCACCGCCGCTGGCCAGAGGGAGGCGCTAGTGAGCACTAGTTTGAAGACGCTCGGTCTTCTGGCCGAGAGAGCGCGGGACAACCAGCTCTTGAGACTCCAGGTGGTGATGTCAAGCCAGGTGTTGTCTAAATGTCTGACTCTGGAGACGTCCAACAGAATAGTCCTTCAGTCTGTCCGATTTCTGTCGCTGATCATCTACAACGAAGAGGTGGCCATTAAACTCTGCTCACATGAATACCCATGTCCTTTCCTCAAAATGTTCCAGTACATCGCCTCTAGACCGGATAAATGCTCTTCTGAGGATGGGTGGAGTCGTTTAGAACTTGAGGTCGTCCGGTTATTAACCAAACTGTTCGCACAGAAGACAGGAACATGGGCGGCTCTGTGTCAGTCATCCTGCCAGTGCATTAACGAGGTCTGATTCACACCTAATCGCTTGTTTCCTTCAAAGTCcgtttattccagttattttagcCGATAGATGACTACATAACACAATGGTGGTGCGGACAGTTGTTGTGGTTTTGCACCGGCAGTGGCTGAAAACGAAAGGCAGAGGGAGTCGGTCGTTGGGCGGTCGGGGCTGGACGGGTCCTGGGTCGCAGGTGCTGCGGGAAGCCCTGATGTTGCTGCACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221649 lncRNA upstream 63033 5668465 ~ 5671375 (+) True G149790
TU221643 lncRNA upstream 80521 5653683 ~ 5653887 (+) True G149786
TU221605 lncRNA upstream 123592 5609797 ~ 5610816 (+) True G149762
TU221564 lncRNA upstream 201577 5531865 ~ 5532831 (+) True G149733
TU221556 lncRNA upstream 239418 5486341 ~ 5494990 (+) True G149729
TU221681 lncRNA downstream 9594 5752232 ~ 5752496 (+) True G149809
TU221683 lncRNA downstream 10541 5753179 ~ 5753718 (+) True G149810
TU221682 lncRNA downstream 10856 5753494 ~ 5753813 (+) False G149810
TU221684 lncRNA downstream 15373 5758011 ~ 5763162 (+) True G149811
TU221702 lncRNA downstream 29697 5772335 ~ 5773042 (+) False rad54l2
XM_043222845.1 mRNA upstream 9200 5673011 ~ 5725208 (+) True LOC122327460
XM_043222992.1 mRNA upstream 79029 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222771.1 mRNA upstream 131133 5590344 ~ 5603275 (+) True ccdc71
XM_043222960.1 mRNA upstream 146066 5583929 ~ 5588342 (+) True kctd6a
XM_043222749.1 mRNA upstream 151367 5578185 ~ 5583041 (+) True pdhb
XM_043222554.1 mRNA downstream 29804 5772442 ~ 5789390 (+) False rad54l2
XM_043222552.1 mRNA downstream 29807 5772445 ~ 5789390 (+) True rad54l2
XM_043222553.1 mRNA downstream 30827 5773465 ~ 5789390 (+) False rad54l2
XM_043222741.1 mRNA downstream 52283 5794921 ~ 5802962 (+) True rassf1
XM_043222742.1 mRNA downstream 56998 5799636 ~ 5802962 (+) False rassf1
TU221516 other upstream 278981 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 629972 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1018456 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1496339 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1881037 3852063 ~ 3853371 (+) True G149157
TU221709 other downstream 61138 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 104530 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 449009 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 495649 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 760276 6502914 ~ 6507672 (+) False ccnt2b

Expression Profile