RNA id: XM_043222742.1


Basic Information

Item Value
RNA id XM_043222742.1
length 1450
RNA type mRNA
GC content 0.55
exon number 5
gene id rassf1
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5794921 ~ 5802962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGCGGGGTTTGGCGGAAGGGTGGGGTTTCAAATCACGCCTAACCGTTGCGTTCCGGTTGCACGAGGTCGGTCAGACAGCCACATCATCCCCCTCAGACTCAGCGGAAGCTTTCACGCAGCCCCGGTGCGCTTGATTTCGGTGTGTTAATAATGACGGACTGCGAGCGGTTGGACATGACGTGGGGCAGCAGCGCGAGCAGCGGGTACTGCAGCCAGAGCGACTCCGAGCACGAGCTCGAGCAGTTCTACACGGCGCGCACCTCGCTCAGAAAGACCAGGAGACGCAAGGAGAAAGACGAGCCGGTGGACTGCAGGAAACAGGAGCTGTCCCTCAGTGAAGTACAACAGAAAGTGAAAGAATACAACGCTCAGGTCAACAGTAACCTCTTCATGGTCCTGAACCGTGATGGATCCTACACTGGCTTCATAAAGGTCCAGTTCAAGCTGGCCCGACCCGTGTCTCTCCCTCCTCCCCGGAGCGcttcctcctcgtcctcctcgtcTTCCTCAGGACTGGACGGCGGCTGCCGCGAGGACAAAGCACTGAAGCACCGCACCTCGTTCTACCTGCCCAGAGACACGGTCAAACACCTGCACATCAGCTCCGGCACTCGGGCCCGGGAGGTCATCGAAGCCCTGCTGAGGAAGTTCACCGTGGTGGACAACCCTGCCAAGTTCTCGCTGTTCGAACGCAGCGAGCGACAGAATCAAGTGTACTTACGCAAGTTAGCCGACGACGAGCGTCCGCTCTTCCTGCGCCTGTGCGCTGGACCCAACGAGAAAGTCCTCAGCTTGGTCCTTAAAGAGAACGAGACGGGGGAAGTTAATTGGGACGCGTTCAGTTTTCCCGAGCTCCAGAACTTCCTGCGCATCCTCCAGCGCGAGGAGGAGGACCACGTGCGGCAGATCGTGCGGCGCTACGCTCTGGCCCGAGACAAGATGAAAGAGGCCCTGAAGAGCCTGAGCACGCCGGGCTGAGGCCAGCGGGCTTCTCGCACCTCGCAAACGAAAGGAACCGCGACGGAAAGGACGCTCGTGCACAGCTTGTTACCGTTTGAATCCAAAGAGTGCGTGTGGAGGGACCCTTTGTCCCGCGGCGGACGTGAGACGGGTCGGGAGCGAAAGGGAAACGCAGCGAGAGAGGAGTGGCGTGTGTTTTAGCGTGACTGGTGAGCGTGGAAGAAATGCTGCGCTCGTACCTCTAGATCTATGCAGATGTGGAGTCGCAGATTATTGGTCTGCGGTGAATGAATATCAGTGCAGACTATAGAGCATTTTAGTGTAATTTATACATGTAATAGAGAGAGAGGAAACGATTATTTTTATGtctgcattaaaataacaccATTTAGTGATATAGTGTTTGTCAGATATTGAAGCACCCACCCGTGTATATATTGGATGCTCACTGTAAAccgaatgaaataaaatatttttccccCTTTAAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221702 lncRNA upstream 26594 5772335 ~ 5773042 (+) False rad54l2
TU221684 lncRNA upstream 36474 5758011 ~ 5763162 (+) True G149811
TU221682 lncRNA upstream 45823 5753494 ~ 5753813 (+) False G149810
TU221683 lncRNA upstream 45918 5753179 ~ 5753718 (+) True G149810
TU221681 lncRNA upstream 47140 5752232 ~ 5752496 (+) True G149809
TU221714 lncRNA downstream 20022 5822984 ~ 5824102 (+) False hyal2b
TU221723 lncRNA downstream 44206 5847168 ~ 5848586 (+) True lsm7
TU221724 lncRNA downstream 46030 5848992 ~ 5849918 (+) True G149829
TU221732 lncRNA downstream 80002 5882964 ~ 5885190 (+) True G149834
TU221752 lncRNA downstream 101871 5904833 ~ 5913295 (+) True G149846
XM_043222554.1 mRNA upstream 10246 5772442 ~ 5789390 (+) False rad54l2
XM_043222552.1 mRNA upstream 10246 5772445 ~ 5789390 (+) True rad54l2
XM_043222553.1 mRNA upstream 10246 5773465 ~ 5789390 (+) False rad54l2
XM_043222598.1 mRNA upstream 54585 5734461 ~ 5745051 (+) True LOC122327321
XM_043222597.1 mRNA upstream 56516 5734416 ~ 5743120 (+) False LOC122327321
XM_043223022.1 mRNA downstream 764 5803726 ~ 5806608 (+) False tusc2b
XM_043223021.1 mRNA downstream 797 5803759 ~ 5806608 (+) True tusc2b
XM_043222671.1 mRNA downstream 7516 5810478 ~ 5823918 (+) True hyal2b
XM_043222670.1 mRNA downstream 9059 5812021 ~ 5823918 (+) False hyal2b
XM_043222669.1 mRNA downstream 9157 5812119 ~ 5823918 (+) False hyal2b
XR_006247632.1 other upstream 56998 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 344209 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 695200 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1083684 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1561567 4237454 ~ 4238069 (+) False LOC122327447
TU221709 other downstream 814 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 44206 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 388685 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 435325 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 699952 6502914 ~ 6507672 (+) False ccnt2b

Expression Profile