RNA id: TU221683


Basic Information

Item Value
RNA id TU221683
length 540
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G149810
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5753179 ~ 5753813 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGTTCGCTAAGCTTACAGATAAGTTTCAGAATtgaaatcaccaatgaaatcttacaactgtgcaataattgctgtttcttttgctgaaaagcttcaaataaaaagcttatttcttgGTTGAATCCCCTTTCAGATGCTTATATGAAGTGTCCTTAAACTAGAATTTAGTGAGAAGGACTTCGTAGGACAATTACACACAGCATAAATACACTAAAGACAAGTGAGACGAGTTACTGCTCCATGTTAGACTGTAGGTGACATCTGCTGGCCTCTTTGGAAAGggacaaaaaatgtattgcgaCTTTTGTTCATCTGATGGACGGATAGAATGTTACTTCACTTTTGATCTGTTTCAGTTAACTATAgatcattttgtcattaaacagttaaatctgtgtgtgtggacaAAATCTGCCTTACAgtcatgaaataatgttttagatAAACTTGCCAGCCTTTCTCATGTTCATGaactttatattttcagttctcCTGATTGATGGGAAAATGTTAGTTATTGTTGGGTTGAACCACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221681 lncRNA upstream 683 5752232 ~ 5752496 (+) True G149809
TU221671 lncRNA upstream 6863 5739572 ~ 5746316 (+) False G149806
TU221672 lncRNA upstream 6863 5739572 ~ 5746316 (+) True G149806
TU221649 lncRNA upstream 81804 5668465 ~ 5671375 (+) True G149790
TU221643 lncRNA upstream 99292 5653683 ~ 5653887 (+) True G149786
TU221684 lncRNA downstream 4293 5758011 ~ 5763162 (+) True G149811
TU221702 lncRNA downstream 18617 5772335 ~ 5773042 (+) False rad54l2
TU221714 lncRNA downstream 69266 5822984 ~ 5824102 (+) False hyal2b
TU221723 lncRNA downstream 93450 5847168 ~ 5848586 (+) True lsm7
TU221724 lncRNA downstream 95274 5848992 ~ 5849918 (+) True G149829
XM_043222598.1 mRNA upstream 8128 5734461 ~ 5745051 (+) True LOC122327321
XM_043222596.1 mRNA upstream 10059 5734409 ~ 5743120 (+) False LOC122327321
XM_043222597.1 mRNA upstream 10059 5734416 ~ 5743120 (+) False LOC122327321
XM_043222845.1 mRNA upstream 27971 5673011 ~ 5725208 (+) True LOC122327460
XM_043222992.1 mRNA upstream 97800 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222554.1 mRNA downstream 18724 5772442 ~ 5789390 (+) False rad54l2
XM_043222552.1 mRNA downstream 18727 5772445 ~ 5789390 (+) True rad54l2
XM_043222553.1 mRNA downstream 19747 5773465 ~ 5789390 (+) False rad54l2
XM_043222741.1 mRNA downstream 41203 5794921 ~ 5802962 (+) True rassf1
XM_043222742.1 mRNA downstream 45918 5799636 ~ 5802962 (+) False rassf1
XR_006247632.1 other upstream 10541 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 297752 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 648743 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1037227 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1515110 4237454 ~ 4238069 (+) False LOC122327447
TU221709 other downstream 50058 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 93450 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 437929 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 484569 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 749196 6502914 ~ 6507672 (+) False ccnt2b

Expression Profile