RNA id: XM_043222992.1


Basic Information

Item Value
RNA id XM_043222992.1
length 1351
RNA type mRNA
GC content 0.48
exon number 1
gene id wu:fb55g09
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5654029 ~ 5655379 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCGGATTTCTGTAGATGTCAACTGTCACATCGAGATCGGCGCTAGTCTGAGACGAAGAGAAAACGTAGTTTGTTGGCACTTATCCAAAGTAAAACGAACTACAAACATATTTTCCACTCCTCAGACATTCAGGCAACGATTCTGCTTTTAATCTGAAGCAAAAAAGACACTGGTTACTCGGAAAAGCTGAGAAGGGGTGTGactgatctcagatcagagCCACACGAGCGTCAAGCTGCCTATACAGAGGGCACTGTGCCAGGCTATGTGCCATTTAAAGCCAGTGACAAAGAAAAAATCGGAAAAGATTGTAAAAAGGTAGACGACCGAGGGGGTGATTCGTGTAGAGAGGCACGAGTAACCAAAACCCCTAAGCGAGGAGAAGAAACAGCCTTTGTTGCCCTCCAGATTATGTGAGAGTGCACTACAGCTGATGCTAGACGCTGAGAAAATGTGCGGAAGGGCCATGATATGCCAATGGGAGGTCTACAGCAATAGACCCTCCATCAAGGAGACGGAGAAACCCAAGAGCGAGTCGAGGAGAGCCAACGGCAGCGCTAAGCAGAAGTGGCACAAATGGGGAAGGAGGCCAGGAAGAAGAGCGCACTATCCAGAAATGCGCAGAAATCGAGCAAGGTTGTCTCGGTGGTCTGGCACTCTGGTTTCATTGCGTCCCGCCAACGTTCAGGGCAACCGAGCGCCTGGCATGAGAGCGCCCAGGAACACCAACCAGTTCCTCATGCATGAGAAATACCAGATGATGCACATGCGATCGGACTCCGTTGGCACCGACAGCGGGTCCGACTGCGAAATGGACTTTGCGGATATGGACTCGTACCTGGGCGTTCTGGAGAACGCTAGAGGCGCACTTTTGGACAGTCCAGATCTGCCATCGCCACCCACATTTTACGCTCGACAGATGAACCAATGCCAGCCGTTTTCCTTCTTCAGCTTCAATCAAGAGGAAAGCATGCAGTATTTCCCATCGGAAGACGACGTGATGCAGAGCGAAGACTTCATGCAAAGGGACTTCAAAGAATTCTGTGACACTGTGGCACCATGTATTTAGACACCTGCCACAGGTAACATGTTTACATCACTTCGGTGGTTTTCTGAACCGTTTTTACCAACTAAATCTGTTGATTGACATGTGAGAGgcatttctttgtttgtttgttctgtgaTGTGTTACGATTGGTGGGGAGGAAAGGGTCCAAAGTAGGAGTGTGACCAGCCAGCCAATCGCCATCGAGCTCATTCGATCACTCTTGACAAACATAGCATCGGTTTGTACTGCGAAACTAAATCCTATGTGaatgtttttcataataaatcCACATTTTGCTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221643 lncRNA upstream 142 5653683 ~ 5653887 (+) True G149786
TU221605 lncRNA upstream 43213 5609797 ~ 5610816 (+) True G149762
TU221564 lncRNA upstream 121198 5531865 ~ 5532831 (+) True G149733
TU221556 lncRNA upstream 159039 5486341 ~ 5494990 (+) True G149729
TU221542 lncRNA upstream 196685 5455573 ~ 5457344 (+) False LOC122327428
TU221649 lncRNA downstream 13086 5668465 ~ 5671375 (+) True G149790
TU221671 lncRNA downstream 84193 5739572 ~ 5746316 (+) False G149806
TU221672 lncRNA downstream 84193 5739572 ~ 5746316 (+) True G149806
TU221681 lncRNA downstream 96853 5752232 ~ 5752496 (+) True G149809
TU221683 lncRNA downstream 97800 5753179 ~ 5753718 (+) True G149810
XM_043222771.1 mRNA upstream 50754 5590344 ~ 5603275 (+) True ccdc71
XM_043222960.1 mRNA upstream 65687 5583929 ~ 5588342 (+) True kctd6a
XM_043222749.1 mRNA upstream 70988 5578185 ~ 5583041 (+) True pdhb
XM_043222624.1 mRNA upstream 77027 5562678 ~ 5577002 (+) False pxk
XM_043222626.1 mRNA upstream 78458 5561282 ~ 5575571 (+) False pxk
XM_043222845.1 mRNA downstream 17632 5673011 ~ 5725208 (+) True LOC122327460
XM_043222596.1 mRNA downstream 79030 5734409 ~ 5743120 (+) False LOC122327321
XM_043222597.1 mRNA downstream 79037 5734416 ~ 5743120 (+) False LOC122327321
XM_043222598.1 mRNA downstream 79082 5734461 ~ 5745051 (+) True LOC122327321
XM_043222554.1 mRNA downstream 117063 5772442 ~ 5789390 (+) False rad54l2
TU221516 other upstream 198602 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 549593 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 938077 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1415960 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1800658 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 79029 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 148397 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 191789 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 536268 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 582908 6238287 ~ 6239357 (+) False npb

Expression Profile