RNA id: XM_043222771.1


Basic Information

Item Value
RNA id XM_043222771.1
length 2717
RNA type mRNA
GC content 0.42
exon number 2
gene id ccdc71
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5590344 ~ 5603275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGCCCCTCCTTCCAGTCAGCCACTCCGAAACGCTCGCCCTCCGAGGCTTTGAGAGCCATTTTTGTTTCATGGCAGGGAGCTCGGCGGCTCTCGTTTCAATGCTCTCAGAAGGGACTCGGTAAAAGACACCTGAAGTCCTTATGCATACCAGCTGTGAAGGTGCACCATGAATTTTGAAGAGCAGGGCATGGGGAGGGTAGTCCATTCCTGGGCCAGATTTGCCCCAGCTGGGCAAACTGCCCTCGAAGAGGCCCTGAGGGTCTTTAACCCCATGTCCAAGGATCTGTCGGACACTGAAAGACAAATGGCGTCCTTTCTTAAAGAGCTGAGGAAAGAGGGAGCCAAGCCTGTGATTTTGAGAAGCAAGGATGTATATGGATACACGTCTTGCACCACAGAACCTATCTCTTCCAGGATTGGCAGCAAGGTTCAGAGAGTGCAGAAACCTTGCAAGAAGCGAGGTCGGAAAGGTTTAAGCAAGTCCAAGGATGTGAATTATGCGATGCTCAGTAGAGCGGCAAAAGACATTCTACAAAACCAACCCAAGATCCTGCTTAAAAATCTCTCAGTGGACAGTCTTAAGCAGAACGTTGCGTCTGCAATGCTAGATAAACATTCTGTTCAAGCGCAGCAGTGCCTCAAACTAACAAACATAAAGGGGTTGACCGGAGGCCACACCGCAAGATTGCAGATTCATTTTGGTTCGGATTCCAAAAGCACCCCCAGTTTTGCTCTGGGACGGCCACCAGATCTCTCCGGAATCCCCCACTCTCCAACGGAAAATGGCAGTCAGACGTCAAATGTAGTTGCCTTGGACAACAAACGTGTTTTGTCATGTCCGTTCAAAGTAGACGATGCCCTTATTGGAGACTCTGCCCCGGTCGTCTGTCAAAATGGTTTCGGTCTTAAAGATGGTAGCATTTATAAAAAGATCGAAACCGTATCAGGTAAACCTGATGTGATGACCAGCGGTCTGGACAATGGTTCGGTGAGGAGACTCCGCTTCCAAAGCTATAACTGGTCCCAGTCTACACTCACCAACGGCCAAGACGTTTCTAGACTGAATGGCAATGGTCTTGAATGGAAGGTTATAAAAGTAGACGATTCGGTCACAGACGAGGAGGTGAGAAGGAAGGCACAGAAAATCTTGCAAGTTAACTTGTCGCCTGTGATACAGATCCATCCTCTTGTTGACTCTGTATAGACTCGTTCTGGggaatttttgttgttgttgtttagtttCCTCTTCAGTTTTCTTGTTTCGCGAAGTTGCATTTGTGGAAACAACATCTAGGTTATCTCCGGTTGGGAGTATTGCAGTTACCTCCAAATTTTGCATTATCATCAAGTAGTTACTGACATCATAATCCAAAgatgagatgtttttttgttttttttctgctctcaCAGTATTTTGTTTTCCCCACACATCTACCTTtcttttgtgtgttgttttttttatctaactTCTGAAGGATTTGACTAATGAACAAACCCTTATTTATGACTATGCAGTTCCCAGAATGTTCCTTGTGTTGGAATACTGTGGGCATGGACTGCTGTCTCACTGGATCATGGGAACAGACTGAATTTGTAGAGTCCTTGGATCCTGCTGATGTCAATGTCACCCAGGGACTTTTTTGACAtcaacagttttcttttttttttgtaatatgttaGTCTGCCGGCATAGACTGCatatgatatttttgtttagacTCTAACATGTTCAAATTGTGGgcacttttgcattttaatttaatttcagggCAAAATAAATGGCCTTATACTTTGAGAAGAGTGAAATGTAACTGAATCTTTGTACTTTTTCCTCCTTGGTGTACTTGTTTCTTTCTGCACTACATTTCTCATAAATTCCTCAAATGTTTCCTTTAATGTGCCAACCCTGGTTTGTCGTTTCTTTACAGTTTTGTTGGTGCCATGACCACaaagaattgcaaaaaaaaaaaagcgcttcATTTTCTGAGTTCTCAGCATCCCGTCGAGCAGTGGACTTGCTTGTCCATTGATTGAACGTACCTCAAACACTTGAATACGAAAATGTTGTCCTCATTAATCCTGCAGTTCATTCCATACATCCATAAGTTGGTTGGTTCATGTTTATGTTTGATGATTTGTGGCCATCTCGATTGCCTTTTATGCATTTAACCAAATTCTGTAAATTACAAACTGATTTTTAATAGGATGGTTTTGATCCAGCGTTAATTGGCGGTAGCAAAATGGAAAAGGAAAAATCCATTCAGGTTGTCTGTTAAATCTTGCTAAAGGCCATTGTTCTGCCTCGCCAGGATTCATTTGAGGATGATTAATGCGCATAGAGCAATCATTTTAAGGCACAACAGGGATGAATGCTTGCTTTTTGTGCAAAATAGGGAAGAGATATAGAATTAAGAGGCCTTTGCCATCTACTTTAGTTTGAATGCGAACCAATGGAGCAGTTTATTGGCGCCACAAGGCAaacgtttaaaatgttttataaatttaattttcgAGTTGACCAACATAtgggtttcatttaaaaaaaaaacaacaaaaaaaaaagtttcgtTCACATGCAAAATACAACAATTTGGTTTCCTgttaatcagtttttattttcatccaGTTGAATCTGTGACACTCAGAAGCTGTAAATGTCAGTGTTGTATCTTTAGTTACTGTTACCGAgttgtgaattaaaaatatgtttgagaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221564 lncRNA upstream 57513 5531865 ~ 5532831 (+) True G149733
TU221556 lncRNA upstream 95354 5486341 ~ 5494990 (+) True G149729
TU221542 lncRNA upstream 133000 5455573 ~ 5457344 (+) False LOC122327428
TU221540 lncRNA upstream 151909 5436837 ~ 5438435 (+) True G149720
TU221458 lncRNA upstream 385980 5203038 ~ 5204364 (+) False LOC122327380
TU221605 lncRNA downstream 6522 5609797 ~ 5610816 (+) True G149762
TU221643 lncRNA downstream 50408 5653683 ~ 5653887 (+) True G149786
TU221649 lncRNA downstream 65190 5668465 ~ 5671375 (+) True G149790
TU221671 lncRNA downstream 136297 5739572 ~ 5746316 (+) False G149806
TU221672 lncRNA downstream 136297 5739572 ~ 5746316 (+) True G149806
XM_043222960.1 mRNA upstream 2002 5583929 ~ 5588342 (+) True kctd6a
XM_043222749.1 mRNA upstream 7303 5578185 ~ 5583041 (+) True pdhb
XM_043222624.1 mRNA upstream 13342 5562678 ~ 5577002 (+) False pxk
XM_043222625.1 mRNA upstream 14773 5561281 ~ 5575571 (+) False pxk
XM_043222992.1 mRNA downstream 50754 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222845.1 mRNA downstream 69736 5673011 ~ 5725208 (+) True LOC122327460
XM_043222596.1 mRNA downstream 131134 5734409 ~ 5743120 (+) False LOC122327321
XM_043222597.1 mRNA downstream 131141 5734416 ~ 5743120 (+) False LOC122327321
XM_043222598.1 mRNA downstream 131186 5734461 ~ 5745051 (+) True LOC122327321
TU221516 other upstream 134917 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 485908 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 874392 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1352275 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1736973 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 131133 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 200501 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 243893 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 588372 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 635012 6238287 ~ 6239357 (+) False npb

Expression Profile