RNA id: XM_043222749.1


Basic Information

Item Value
RNA id XM_043222749.1
length 1465
RNA type mRNA
GC content 0.53
exon number 10
gene id pdhb
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5578185 ~ 5583041 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCCGTTTCCCGTTCTGATTTTACAACGCGCCCGCTGATTGGTCGAAACCGCTGGCACGACGGCCCCGTCTCCACGCAGAGGACAGCGGAACATGGCGTCTCTGAGGTGTTTCCTGCGCTCAGGGAAGaAGGCCGTTGCGGCGGTGTTGCGGCGGGAGTTTCACGGGACGTCGCCGGCTGCGGTGCAGGTAACGGTCCGAGATGCCCTCAACCAGGCCATGGATGAGGAGCTGGAGAGGGATGAACGGGTTTTCCTCCTCGGAGAGGAAGTCGCTCAGTATGACGGCGCATATAAGGTTAGCAGAGGCCTTTGGAAGAAGTACGGAGATAAACGCATCATTGACACACCAATTACAGAGATGGGCTTTGCCGGCATCGCCGTTGGAGCGGCCATGGCTGGTTTGAGGCCCATCTGTGAGTTCATGACCTTCAACTTCTCCATGCAAGCCATCGACCAGGTCATCAACTCCGCCGCCAAGACCTACTACATGTCTGCCGGCCTGCAGTCAGTCCCCATTGTGTTCCGCGGGCCCAACGGAGCTTCGGCCGGCGTGGCCGCCCAGCACTCTCAGTGTTTCGCCGCCTGGTACGGTCACTGTCCCGGCCTGAAGGTGGTCAGCCCCTTGAGCGCCGAGGACGCCAAGGGCCTTCTGAAGTCAGCCATCCGTGACGATAACCCTGTGGTGGTTTTGGAGAACGAGCTGATGTACGGCGTGCCGTTTGAGATGTCTGAACAGGCTCAGTCAAAAGACTTCGTCGTGCCAATCGGAAAAGCTAAGATCGAGAGACAGGGAAATCACGTAACACTGGTGTCTCATTCCCGAATGGTCGGCCTGTGTCTCGACGCCGCTGCCGTCTTGGCCAAAGAAGGGATAGAATGTGAGGTGATCAACATGCGCACAATCCGGCCTCTGGACTCGGAAGCCATTGAAACAAGCATAATGAAAACCAATCATCTCATCACTGTGGAGGGAGGCTGGCCTCAGTTTGGAGTCGGGGCAGAGATCCTCGCCAGGATTATGGAggGTCCTGCTTTCAATTACCTGGACGCCCCTGCGGTCCGGGTCACGGGTGTAGATATTCCAATGCCGTACGCCAAGATTTTGGAGGACAACAGCATACCGCAAATCAAGGACATCATCTTCTCCGTCAAAAAGACTCTGAACGTTTAACATAATAGATGTCCCTACTGGAAcacattaaatatcaaatactaCATGTTTTCTTCCCGCTTCTGCCTCGCTGTTTTTGGGAAATGGGATGTCCTCTTTCATCTTGTACAGGTCTTTCTGTTACACGGCCCTTTCTTCATtggcaatatattaaaaaaaaatgttctcattGACTCTGACATGAGGTTTTGTCATGAGGGTAACGTTTATTACGCCTATAAACAACCGATCATGTGTATTATGCTGTAAATTCTACTGTAAGCTAAAGTAATAAACTTTTATCACAAAGGGT

Function

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity molecular_function

KEGG:

id description
K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221564 lncRNA upstream 45354 5531865 ~ 5532831 (+) True G149733
TU221556 lncRNA upstream 83195 5486341 ~ 5494990 (+) True G149729
TU221542 lncRNA upstream 120841 5455573 ~ 5457344 (+) False LOC122327428
TU221540 lncRNA upstream 139750 5436837 ~ 5438435 (+) True G149720
TU221458 lncRNA upstream 373821 5203038 ~ 5204364 (+) False LOC122327380
TU221605 lncRNA downstream 26756 5609797 ~ 5610816 (+) True G149762
TU221643 lncRNA downstream 70642 5653683 ~ 5653887 (+) True G149786
TU221649 lncRNA downstream 85424 5668465 ~ 5671375 (+) True G149790
TU221671 lncRNA downstream 156531 5739572 ~ 5746316 (+) False G149806
TU221672 lncRNA downstream 156531 5739572 ~ 5746316 (+) True G149806
XM_043222621.1 mRNA upstream 1183 5561280 ~ 5577002 (+) True pxk
XM_043222622.1 mRNA upstream 1183 5561281 ~ 5577002 (+) False pxk
XM_043222623.1 mRNA upstream 1183 5561281 ~ 5577002 (+) False pxk
XM_043222624.1 mRNA upstream 1183 5562678 ~ 5577002 (+) False pxk
XM_043222625.1 mRNA upstream 2614 5561281 ~ 5575571 (+) False pxk
XM_043222960.1 mRNA downstream 888 5583929 ~ 5588342 (+) True kctd6a
XM_043222771.1 mRNA downstream 7303 5590344 ~ 5603275 (+) True ccdc71
XM_043222992.1 mRNA downstream 70988 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222845.1 mRNA downstream 89970 5673011 ~ 5725208 (+) True LOC122327460
XM_043222596.1 mRNA downstream 151368 5734409 ~ 5743120 (+) False LOC122327321
TU221516 other upstream 122758 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 473749 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 862233 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1340116 4237454 ~ 4238069 (+) False LOC122327447
TU220637 other upstream 1724814 3852063 ~ 3853371 (+) True G149157
XR_006247632.1 other downstream 151367 5734408 ~ 5742638 (+) False LOC122327321
TU221709 other downstream 220735 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 264127 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 608606 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 655246 6238287 ~ 6239357 (+) False npb

Expression Profile