ccdc71 (si:dkeyp-87e7.4,LOC107658392,LOC107593069,LOC107745409,LOC107721008,LOC107586916,LOC107653172)


Basic Information

Item Value
gene id ccdc71
gene name si:dkeyp-87e7.4,LOC107658392,LOC107593069,LOC107745409,LOC107721008,LOC107586916,LOC107653172
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5590344 ~ 5603275 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222771.1
CCGCCCCTCCTTCCAGTCAGCCACTCCGAAACGCTCGCCCTCCGAGGCTTTGAGAGCCATTTTTGTTTCATGGCAGGGAGCTCGGCGGCTCTCGTTTCAATGCTCTCAGAAGGGACTCGGTAAAAGACACCTGAAGTCCTTATGCATACCAGCTGTGAAGGTGCACCATGAATTTTGAAGAGCAGGGCATGGGGAGGGTAGTCCATTCCTGGGCCAGATTTGCCCCAGCTGGGCAAACTGCCCTCGAAGAGGCCCTGAGGGTCTTTAACCCCATGTCCAAGGATCTGTCGGACACTGAAAGACAAATGGCGTCCTTTCTTAAAGAGCTGAGGAAAGAGGGAGCCAAGCCTGTGATTTTGAGAAGCAAGGATGTATATGGATACACGTCTTGCACCACAGAACCTATCTCTTCCAGGATTGGCAGCAAGGTTCAGAGAGTGCAGAAACCTTGCAAGAAGCGAGGTCGGAAAGGTTTAAGCAAGTCCAAGGATGTGAATTATGCGATGCTCAGTAGAGCGGCAAAAGACATTCTACAAAACCAACCCAAGATCCTGCTTAAAAATCTCTCAGTGGACAGTCTTAAGCAGAACGTTGCGTCTGCAATGCTAGATAAACATTCTGTTCAAGCGCAGCAGTGCCTCAAACTAACAAACATAAAGGGGTTGACCGGAGGCCACACCGCAAGATTGCAGATTCATTTTGGTTCGGATTCCAAAAGCACCCCCAGTTTTGCTCTGGGACGGCCACCAGATCTCTCCGGAATCCCCCACTCTCCAACGGAAAATGGCAGTCAGACGTCAAATGTAGTTGCCTTGGACAACAAACGTGTTTTGTCATGTCCGTTCAAAGTAGACGATGCCCTTATTGGAGACTCTGCCCCGGTCGTCTGTCAAAATGGTTTCGGTCTTAAAGATGGTAGCATTTATAAAAAGATCGAAACCGTATCAGGTAAACCTGATGTGATGACCAGCGGTCTGGACAATGGTTCGGTGAGGAGACTCCGCTTCCAAAGCTATAACTGGTCCCAGTCTACACTCACCAACGGCCAAGACGTTTCTAGACTGAATGGCAATGGTCTTGAATGGAAGGTTATAAAAGTAGACGATTCGGTCACAGACGAGGAGGTGAGAAGGAAGGCACAGAAAATCTTGCAAGTTAACTTGTCGCCTGTGATACAGATCCATCCTCTTGTTGACTCTGTATAGACTCGTTCTGGggaatttttgttgttgttgtttagtttCCTCTTCAGTTTTCTTGTTTCGCGAAGTTGCATTTGTGGAAACAACATCTAGGTTATCTCCGGTTGGGAGTATTGCAGTTACCTCCAAATTTTGCATTATCATCAAGTAGTTACTGACATCATAATCCAAAgatgagatgtttttttgttttttttctgctctcaCAGTATTTTGTTTTCCCCACACATCTACCTTtcttttgtgtgttgttttttttatctaactTCTGAAGGATTTGACTAATGAACAAACCCTTATTTATGACTATGCAGTTCCCAGAATGTTCCTTGTGTTGGAATACTGTGGGCATGGACTGCTGTCTCACTGGATCATGGGAACAGACTGAATTTGTAGAGTCCTTGGATCCTGCTGATGTCAATGTCACCCAGGGACTTTTTTGACAtcaacagttttcttttttttttgtaatatgttaGTCTGCCGGCATAGACTGCatatgatatttttgtttagacTCTAACATGTTCAAATTGTGGgcacttttgcattttaatttaatttcagggCAAAATAAATGGCCTTATACTTTGAGAAGAGTGAAATGTAACTGAATCTTTGTACTTTTTCCTCCTTGGTGTACTTGTTTCTTTCTGCACTACATTTCTCATAAATTCCTCAAATGTTTCCTTTAATGTGCCAACCCTGGTTTGTCGTTTCTTTACAGTTTTGTTGGTGCCATGACCACaaagaattgcaaaaaaaaaaaagcgcttcATTTTCTGAGTTCTCAGCATCCCGTCGAGCAGTGGACTTGCTTGTCCATTGATTGAACGTACCTCAAACACTTGAATACGAAAATGTTGTCCTCATTAATCCTGCAGTTCATTCCATACATCCATAAGTTGGTTGGTTCATGTTTATGTTTGATGATTTGTGGCCATCTCGATTGCCTTTTATGCATTTAACCAAATTCTGTAAATTACAAACTGATTTTTAATAGGATGGTTTTGATCCAGCGTTAATTGGCGGTAGCAAAATGGAAAAGGAAAAATCCATTCAGGTTGTCTGTTAAATCTTGCTAAAGGCCATTGTTCTGCCTCGCCAGGATTCATTTGAGGATGATTAATGCGCATAGAGCAATCATTTTAAGGCACAACAGGGATGAATGCTTGCTTTTTGTGCAAAATAGGGAAGAGATATAGAATTAAGAGGCCTTTGCCATCTACTTTAGTTTGAATGCGAACCAATGGAGCAGTTTATTGGCGCCACAAGGCAaacgtttaaaatgttttataaatttaattttcgAGTTGACCAACATAtgggtttcatttaaaaaaaaaacaacaaaaaaaaaagtttcgtTCACATGCAAAATACAACAATTTGGTTTCCTgttaatcagtttttattttcatccaGTTGAATCTGTGACACTCAGAAGCTGTAAATGTCAGTGTTGTATCTTTAGTTACTGTTACCGAgttgtgaattaaaaatatgtttgagaAA

Function

NR:

description
PREDICTED: coiled-coil domain-containing protein 71

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222771.1 True 2717 mRNA 0.42 2 5590344 5603275

Neighbor

gene id symbol gene type direction distance location
kctd6a kctd6a,LOC107658394,LOC107586999,LOC107653167,LOC107593104,LOC107745413 coding upstream 2002 5583929 ~ 5588342 (+)
pdhb pdhb,LOC107721006,LOC107586915,LOC107745408,LOC107658396,LOC107593072,LOC107653173 coding upstream 7303 5578185 ~ 5583041 (+)
pxk pxk,LOC107658395,LOC107653174,LOC107745407 coding upstream 13342 5561280 ~ 5577002 (+)
LOC122327560 rpp14,LOC107658379,LOC107745404,LOC107586974,LOC103374991 coding upstream 29431 5560276 ~ 5560913 (+)
rpp14 LOC107653175,LOC107720992,LOC107745405 coding upstream 30009 5558909 ~ 5560335 (+)
wu:fb55g09 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 coding downstream 50754 5654029 ~ 5655379 (+)
LOC122327460 cenpp,LOC107704453,LOC107658387,LOC107731326,LOC107593065 coding downstream 69736 5673011 ~ 5725208 (+)
rassf1 rassf1,LOC107756015,LOC107695625,LOC107704437,LOC107586927,LOC107731340 coding downstream 191646 5794921 ~ 5802962 (+)
abhd14a LOC107756017,LOC107586929,LOC107695627,LOC107704435,LOC107593054,LOC107731335 coding downstream 221829 5825104 ~ 5830334 (+)
mfsd14a1 mfsd14a,hiat1b,LOC107695628,LOC107704433,LOC107731334,LOC107756019 coding downstream 227995 5831270 ~ 5839648 (+)
G149733 NA non-coding upstream 57513 5531865 ~ 5532831 (+)
G149729 NA non-coding upstream 95354 5486341 ~ 5494990 (+)
G149720 NA non-coding upstream 151909 5436837 ~ 5438435 (+)
G149641 NA non-coding upstream 515716 5073993 ~ 5074628 (+)
G149627 NA non-coding upstream 520344 4973734 ~ 5070000 (+)
G149762 NA non-coding downstream 6522 5609797 ~ 5610816 (+)
G149786 NA non-coding downstream 50408 5653683 ~ 5653887 (+)
G149790 LOC107586918 non-coding downstream 65190 5668465 ~ 5671375 (+)
G149806 NA non-coding downstream 136297 5739572 ~ 5746316 (+)
G149809 NA non-coding downstream 148957 5752232 ~ 5752496 (+)
LOC122327428 NA other upstream 132988 5453165 ~ 5457356 (+)
LOC122327380 NA other upstream 385980 5186190 ~ 5204364 (+)
LOC122327529 NA other upstream 482920 5103493 ~ 5107424 (+)
G149646 NA other upstream 485908 5103529 ~ 5104436 (+)
LOC122328161 NA other upstream 591370 4992011 ~ 4998974 (+)
LOC122327321 NA other downstream 131133 5734408 ~ 5745051 (+)
rad54l2 rad54l2,LOC107756013,LOC107695610,LOC107593093 other downstream 169060 5772335 ~ 5789390 (+)
tusc2b tusc2,tusc2b,LOC107587002,LOC107593101,LOC107695626 other downstream 200451 5803726 ~ 5806623 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other downstream 207203 5810478 ~ 5824102 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other downstream 243856 5847131 ~ 5848586 (+)

Expression


Co-expression Network