RNA id: TU221714


Basic Information

Item Value
RNA id TU221714
length 1119
lncRNA type sense_over
GC content 0.34
exon number 1
gene id hyal2b
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5810478 ~ 5824102 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTcgtaatgcattaaatgttttttgattaaaatgtttttctaattaaactaattcattaattacagtaacaaaaagaaaaccataatgatttaaatgaagtCATGCTAATAATTTCAATTCAATAATGCTACAGTGACAATTTAAATGATGTACAATAATATCTAATCAATAagataatattgtattatactataaatgtgtttaataatattaacatttaaaattagaattttgaaTTCATCTTTACAGTATTAAGGATAATGTCTTATAAATAGGTTCCTTTATGCAACAATATGTCGCTATTTTCCTTTAATTTGGGGTGAAATGTGATTTCAGACACGTTCTTAGACCACTGCTGGATAGTGAGGAATTTTTGAAAGTCTATTAaaacatgaatgtaaatgttaaatcaaacaaatatgccttttccattttttcctGCCTAGGTTGCACAAATCCGTTTTGAGGCAGGGTTTCCCCCTTTAATCGCTGAACTTTGCGTTTCTGCTCTTTATTTGCGCGGGATTAACCGAAAAGGCTTTGTGTTTCCAGTTTGTgtcattacagtaaaaaaaaaaagactgtttttGTCATTGTAGTGCCTTTTTAAAGGCACGGTTCACCTAAAAACGAAAACGCCGTCGTTTATGAAATGATGCTTTCGATGCTGTTTGACTGCGTTCTCGTCTGGACGGCGAATCAAACATTGATAGAAATGTGGTATTAGGGTGAACGGTCTCTTTAACTGATCCCGTGTTGACCCTCACAAGTGCAACGTTAAACCCAAAAAACTTTCATACTAAGAGTTTTGATACCGAACTGTGCTTGTTTTGTCCGGATTCGTAGCTAGAATGGTTACCTTTCTGGTCGAGTGAATTCTTCTGAAAGTGTttcgttttatatttttacaataaatttcatatttaaaagccatCTCTTGCTTGTAGTTCTGTAGCTGCACGAAGCAAGTCGGAGGCCGTGTCGAAAAGCtgagctttgttttatttaaactggaCGTTTTTGATCGCATTATTTAGGAATCTGCGTCTAAACGTCGATTTGCCCTCATCCTCACTAGCTGGTTTACTTTTCCTCTAGTTTTTTTTCCAGGCCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221702 lncRNA upstream 49942 5772335 ~ 5773042 (+) False rad54l2
TU221684 lncRNA upstream 59822 5758011 ~ 5763162 (+) True G149811
TU221682 lncRNA upstream 69171 5753494 ~ 5753813 (+) False G149810
TU221683 lncRNA upstream 69266 5753179 ~ 5753718 (+) True G149810
TU221681 lncRNA upstream 70488 5752232 ~ 5752496 (+) True G149809
TU221723 lncRNA downstream 23066 5847168 ~ 5848586 (+) True lsm7
TU221724 lncRNA downstream 24890 5848992 ~ 5849918 (+) True G149829
TU221732 lncRNA downstream 58862 5882964 ~ 5885190 (+) True G149834
TU221752 lncRNA downstream 80731 5904833 ~ 5913295 (+) True G149846
TU221748 lncRNA downstream 99805 5923907 ~ 6012681 (+) True LOC122327524
XM_043223022.1 mRNA upstream 16376 5803726 ~ 5806608 (+) False tusc2b
XM_043223021.1 mRNA upstream 16376 5803759 ~ 5806608 (+) True tusc2b
XM_043222741.1 mRNA upstream 20022 5794921 ~ 5802962 (+) True rassf1
XM_043222742.1 mRNA upstream 20022 5799636 ~ 5802962 (+) False rassf1
XM_043222554.1 mRNA upstream 33594 5772442 ~ 5789390 (+) False rad54l2
XM_043222898.1 mRNA downstream 1002 5825104 ~ 5830334 (+) True abhd14a
XM_043222666.1 mRNA downstream 7168 5831270 ~ 5839648 (+) True mfsd14a1
XM_043222667.1 mRNA downstream 7168 5831270 ~ 5839648 (+) False mfsd14a1
XM_043223023.1 mRNA downstream 23029 5847131 ~ 5848296 (+) False lsm7
XM_043222591.1 mRNA downstream 27213 5851315 ~ 5859224 (+) True tmprss9
TU221709 other upstream 16361 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 80346 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 367557 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 718548 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1107032 4712862 ~ 4715952 (+) True LOC122327517
TU221722 other downstream 23066 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 367545 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 414185 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 678812 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 884386 6708488 ~ 6708891 (+) True G150369

Expression Profile