RNA id: XM_043222591.1


Basic Information

Item Value
RNA id XM_043222591.1
length 4122
RNA type mRNA
GC content 0.45
exon number 14
gene id tmprss9
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5851315 ~ 5859224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATTGAAGTATATTGTATCGCTTGCTCAAGCTGTATGCCAAAACTCGCCTTTTTATTTGATACTGCTGCATTGTTGTCGGCAAGCATgcaaataatagttttaatcagCATTTATCATCTATTTGACATCAATGCATGTAATGAGATAGTTGTTGAGGCATTCACGACCCTGAAGTGAAAAGTAACTATATCGATATATTCAGGAGCAGCAAGCTTcgtatttctgttttataacaTTTCTGACTCGAAAGAggtttgttttggtttctcTGAACCACTCCTAGCATTGTCTCTTTCTATGGCTGGTGAAATAATACTTTGGCGTCCCACGAGATGATTTTCAATGTCGGCACCCGAAGGACTCAcatttgcttttgagctctcaAAAACACAGTCCTGTTTTTACCCTGTCATCTGTCTGTATTTCTTACCTCCGTGTGTTCTCGTGTTTTACAGTTTGGATGTCCAGGTTGTGTTGCAGGTCTTTGTATAGACTGAAATGGAGAAGAAAGACTTGAATAAGTGGCCCGAGGGTGATCCACGGCCAGCGTACCTCTCCACTTGCAAATGTATGACTTTAGCTGCCGTACTGATTCTTCTCATTATCGGGGCGGCTGTGGGATTTATGACAGCTTACTTAATACAGGAGGAACATTATTTCATGGAGACCGTGGAACTGGAAGGTCTCAATTATGATGCAGATCTGCGAGATAAAACATCGGGATTCTATGTAGTTCTGACCGCGACTCTGAAAGCAAAGATCATGAATATCTTTAGCGCCTCTGCAGCAGCAAGTCACTTTACTGAATGCCAGATAATTGCATACGGGAATGCCAACACAAATGTTTTGACCACGCTACGTTTGGTCTTCCGGGTCTCTCAAATCCAGGGGTATACGGAGAGATTTGTTCAAGACCTCCTCCGCTCTGGATTTAAGGCCATGTTGAATGGAAAACCCATTGTTATCCCAAATTATGGCCAGATCTCTAGCATCGTCCTTCTCGGAGCAAGTGGAAAGTCGTTCTATGAAATTGGGAATGACATAAGTAAATGTCCCGAGAACACATTCACTTGTGACAATGGCGAgtgcatcacaaaaataaatccaGAATGTGACTCTATAAACGACTGTGTTGATGGTTCAGATGAAGCCTCTTGCTCCTGTGGAACCCGTCCAGCCATGGCTAACCGTATTGTGGGTGGTGAAAACACCCGTCACGGGGAGGTACCCTGGCAGGTCAGTCTGCGACTACGTGGCCGCCATACCTGCGGAGCTTCCATCGTCAACAATCACTGGCTCGTCAGCGCCGCCCACTGTTTTGAAATAGAAAACAACCCGAAAGATTGGACGGCTCTTGTGGGAGCCAATCTAGTCAGTGGGGAAGAGGGTGACGCCACTATAATAAACATCAAGTCCCTGGTCGTGTCTCCAAGATACGATCCAATGACCACTGACAGCGATGTGACCGTGCTGGAGTTGGAAACACCGCTGACGTTCAGCTCTTATGTTCAGCCAGTCTGTATCCCATCATCCTCTCATATTTTCAGTCCTGGGCAAAACTGCATCGTCTCTGGCTGGGGAGCTCTTAATCAGTACACAAATGAGGTGCCTTCAACATTACAGAAGGCAATTGTAAAGATCATTGACTCAAAAGTTTGCAACAAGTCAACTGTATACAGAGGTGCACTTACTCAAAATATGATGTGTGCTGGATTTCTTCAAGGAAAGGTGGACTCTTGTCAGGGAGATTCTGGAGGCCCTCTTGTATGCGAGACGTCACCTGGACGCTTTTTCTTAGCTGGCGTGGTGAGCTGGGGAGTGGGATGCGCGCAGATAAACAAGCCTGGAGTCTATTCCCGCGTTACCAAGCTCCGCAACTGGATTCTGAGCTACACCAACACTGCACCAACAATCCCAGTCGCCTCCACTGTACCTAGTGTCACAAACACTACAGTTCACATTGCCCAAGTTATGAGCCCATCCTCTGAACAAGTCAGTAATGATTATTACTCATCTCCTGGGAACTGCAGTGGAAATTATAACTGTGGTGGAAACATGTGCATCAGCAAGACAAACCCAGAGTGTGACAGAGTCATTGACTGCCCCAATGAGGCTGACGAGAAAAACTGTGACTGTGGGAATCGTCCAGCTATGGGCCAGGAGAGGATTATTGGTGGTGTCACTGCCCTTCGTGGTGAATGGCCATGGATAGGCAGTTTGCAATACCAACGCACTCACCGCTGTGGAGCTACACTCATCCACTGCAAATGGCTCCTGACTGCAGCTCACTGCTTCAGAGGTGACCAGAACCCTGCCAGCTGGACGGTAAGTCTTGGCTCTGTCCTTTGGTCTGGAGTGGGTGCTCTGGTGATTCCAGTACAAAGGGTCATCCCTCATCCTGCTTTCAATGGTAGCACCATGGACTTCGATGTGGCCCTGCTGGAACTCTCCATTCCAGCCCCCAAGTCCTACACCATCCAGACTGTGTGTTTGCCTTCTCCCTGGCATAGCTTCATCAAAAATATGGAATGCTACATCATTGGATGGGGTGCCGTGAGGGAGGACGGTATGATAACCAATTTGCTGCAGAAAGCACAAGTTAATGTCATTGATCAGCTGGACTGCCAGCAAGCTTACGGTGCTGAGCTCACCAACAACATGATGTGTGCTGGCTCCATGGAAGGAGAAAAGGACACATGTCTGGGAGACTCAGGGGGTCCTCTGGTGTGCCGTGAACCCCAGGGCCGGTGGTTTCTGGCTGGGGTGACTAGCTGGGGTCACGGCTGTGGTCGACTTGGCTTCCCAGGAGTTTACATGCAGGTCACGGCTGTCAGAGAATGGATATCTACATACctccctttttaaaaatatcctccacGTTTCTTACAAATGACGTGCAGTCGTATCTCTCAACTGAAACGAATGCATGAAACTCTGATGGACAACTTTACCAACTGGTTCATACTgtactgttaaaatatttatttttggtatttattACCAATGCAATCTGGTGTATGAAGCAGTAGCCCTTGATGTGCTATATCCAGTGAGGCATTAAACCATAAAGCCTCCACTAAATCTGCAGACGTTCTAATGATTCTGAAGGAATTATCAATGGAGATGCTCCTAATTAGTTAGGATACAGATTCTATGACAAAAATCACCATTTATATTACTGGAACACAAAATGGAGGCAATTTGATTGTACTTGGTTGATGCAGAAAGgattaaatgaaacattgtaTATTACAATGGGAACTTCGATACCATAGTTTATGCCATTAATGGGTTCGTTCGACATTAATAATTccccctcatgtcattccaaaccagtaagaccttcgttcatcttcagaacacaaattctataagatattttggatgaaatctgaccctccatagacaacaCCACACCTTCAGTTTcgaataagagaaaaaaaaattccgcaaaaaacaaaaaaactcaggCATTCTTCTCCCTTGATTTACGACTTCCACAATTTTGAAGAGTCCTTAAGAACGCATTTGATGTAATCAGCGTTGCTTACGTTTAGGGGGAAAGCGCGTGTATGCGTTGTGATATTCTCTAAAATGGAGGAAGACGTAAAGAGAGAAGAATCGTTGAGTacatgttttgatgtttttacgACATTTCTGGACTACAGACCATTTTAGTTGTGTTGCtatctatggagggtcagacgGTTCTCCGATTTCAgctaaaatatctttatgttccaaagatgaacaaagatctTACGAGTTTGGAACGAGTAGTTAATGACAGTATTTTGGGATGAACTAACCCTTCAAGGCCCTGTCCCAGATGGAACACTCTTAAAGACTTACAATAGCCACAGCGTGTGCACGTCTTAAGAAGTTTCTGCGAGTTTTCAAGCGCGTTGCAATTTTCTCTGGAACTGATTTCGAGCTTAGCTACTAACAGCAGATGGCACTGCATGCTACTGGCGACACCTCTACCCAAACGACAAAGTGTCGTCACGAAAAAGTACAGACCGCAAAGGGTTTTGAACGGCATTTGGGACAGGACCTAAACTGTTGCTCCACCATGACTTGACCAGGCTATATCAGAAGACAGTTAAAAATGCGTGCTATAG

Function

GO: NA

KEGG:

id description
K09640 TMPRSS9; transmembrane protease serine 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221724 lncRNA upstream 1397 5848992 ~ 5849918 (+) True G149829
TU221723 lncRNA upstream 2729 5847168 ~ 5848586 (+) True lsm7
TU221714 lncRNA upstream 27213 5822984 ~ 5824102 (+) False hyal2b
TU221702 lncRNA upstream 78273 5772335 ~ 5773042 (+) False rad54l2
TU221684 lncRNA upstream 88153 5758011 ~ 5763162 (+) True G149811
TU221732 lncRNA downstream 23740 5882964 ~ 5885190 (+) True G149834
TU221752 lncRNA downstream 45609 5904833 ~ 5913295 (+) True G149846
TU221748 lncRNA downstream 64683 5923907 ~ 6012681 (+) True LOC122327524
TU221790 lncRNA downstream 135649 5994873 ~ 5997676 (+) True G149874
XR_006247684.1 lncRNA downstream 238648 6097872 ~ 6098526 (+) True LOC122327604
XM_043223023.1 mRNA upstream 3019 5847131 ~ 5848296 (+) False lsm7
XM_043222666.1 mRNA upstream 11667 5831270 ~ 5839648 (+) True mfsd14a1
XM_043222667.1 mRNA upstream 11667 5831270 ~ 5839648 (+) False mfsd14a1
XM_043222898.1 mRNA upstream 20981 5825104 ~ 5830334 (+) True abhd14a
XM_043222669.1 mRNA upstream 27397 5812119 ~ 5823918 (+) False hyal2b
XM_043222620.1 mRNA downstream 3656 5862880 ~ 5872295 (+) True enc3
XM_043223017.1 mRNA downstream 135164 5994388 ~ 6002630 (+) False LOC122327565
XM_043223016.1 mRNA downstream 142033 6001257 ~ 6002630 (+) True LOC122327565
XM_043222967.1 mRNA downstream 147258 6006482 ~ 6008186 (+) True LOC122327535
XM_043222947.1 mRNA downstream 150258 6009482 ~ 6011556 (+) False LOC122327524
TU221722 other upstream 2729 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 44692 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 108677 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 395888 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 746879 5103529 ~ 5104436 (+) True G149646
TU221826 other downstream 332423 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 379063 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 643690 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 849264 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 2308225 8167449 ~ 8168272 (+) True G150756

Expression Profile