RNA id: XR_006247684.1


Basic Information

Item Value
RNA id XR_006247684.1
length 541
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC122327604
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6097872 ~ 6098526 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACAAAGTTTGTACGTCACTGAGTGATTTACCTTCTTTCATCAGGAACTTAGCAAGTTTCTCAGTAAAATCTCCAGAGGCAGTGTCAGGTACGGATTCTCTTGGTTGGACTGCTGTGATGGTCCATGGCTCTTTATTTTCTCCAGGTGACACTTCTGGAGGTAGGTGTGTGGTGTCAATGGCTTGTCTGCACTCACACAACGCAAAGACAAATCGTGAGGTAGGTCCTTCTCTTGTGTCTCTGACACGAACTCTTCCTAGGGCTTTTATGGTTTCCAAAGTCTCTTCCATCTTAGCCACTTCTGTGTGTACAGGTACATTACTCAACATTAAAGCATGACCCTCATCAACACCAACATCTTTGCACCAGCTGATTAACTCTGCTTGCAGgaaTTCTTCAGTGACTTACCAGAGGGagatcccggacgagcccccaattTATGTAGCGCCCCCTACCTCCTTTTATAATGGCTTAGTAAGGAGCAGCACCAGGTTCAATAAACTAATGCCTAAGAGATGGTGTATTAAAAAGGCCCCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221748 lncRNA upstream 85191 5923907 ~ 6012681 (+) True LOC122327524
TU221790 lncRNA upstream 100196 5994873 ~ 5997676 (+) True G149874
TU221752 lncRNA upstream 184577 5904833 ~ 5913295 (+) True G149846
TU221732 lncRNA upstream 212682 5882964 ~ 5885190 (+) True G149834
TU221724 lncRNA upstream 247954 5848992 ~ 5849918 (+) True G149829
XR_006247681.1 lncRNA downstream 16523 6115049 ~ 6160723 (+) True LOC122327601
TU221805 lncRNA downstream 16648 6115174 ~ 6143818 (+) False LOC122327601
TU221816 lncRNA downstream 87443 6185969 ~ 6187870 (+) True G149891
TU221817 lncRNA downstream 90591 6189117 ~ 6191390 (+) True G149892
TU221818 lncRNA downstream 90591 6189117 ~ 6191390 (+) False G149892
XM_043222542.1 mRNA upstream 27952 6022006 ~ 6069920 (+) True bcor
XM_043222947.1 mRNA upstream 86316 6009482 ~ 6011556 (+) False LOC122327524
XM_043222967.1 mRNA upstream 89686 6006482 ~ 6008186 (+) True LOC122327535
XM_043223017.1 mRNA upstream 95242 5994388 ~ 6002630 (+) False LOC122327565
XM_043223016.1 mRNA upstream 95242 6001257 ~ 6002630 (+) True LOC122327565
XM_043222650.1 mRNA downstream 132746 6231272 ~ 6235360 (+) True sgsh
XM_043223004.1 mRNA downstream 137591 6236117 ~ 6238292 (+) True npb
XM_043222885.1 mRNA downstream 212143 6310669 ~ 6312558 (+) False LOC122327484
XM_043222884.1 mRNA downstream 212173 6310699 ~ 6312558 (+) True LOC122327484
XM_043222886.1 mRNA downstream 212173 6310699 ~ 6312558 (+) False LOC122327484
TU221722 other upstream 249286 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 291249 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 355234 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 642445 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 993436 5103529 ~ 5104436 (+) True G149646
TU221826 other downstream 93121 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 139761 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 404388 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 609962 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 2068923 8167449 ~ 8168272 (+) True G150756

Expression Profile