RNA id: TU221805


Basic Information

Item Value
RNA id TU221805
length 258
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC122327601
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6115049 ~ 6160723 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGACAACTTCCCGCAAAAGACGAGAAAGTGGAGATAAATACAAGAGACGCAACGTGGTGGTGCGCTAACAGCCTGGAAGACAAAGACGGACACCAGTTAgactgtgagagagagaggagggacgGGAATCAGGAAAGATCTGGACTCTAACACAAGACAGCGGAAGCACAAAGACTCTACATGTCGACGCTCTGGCCACGAGGCAGTCGGCCCAGCTTAAAGcctCTAGCATTAGCACGAGGAAGCGCTTCATTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247684.1 lncRNA upstream 16648 6097872 ~ 6098526 (+) True LOC122327604
TU221748 lncRNA upstream 102493 5923907 ~ 6012681 (+) True LOC122327524
TU221790 lncRNA upstream 117498 5994873 ~ 5997676 (+) True G149874
TU221752 lncRNA upstream 201879 5904833 ~ 5913295 (+) True G149846
TU221732 lncRNA upstream 229984 5882964 ~ 5885190 (+) True G149834
TU221816 lncRNA downstream 42151 6185969 ~ 6187870 (+) True G149891
TU221817 lncRNA downstream 45299 6189117 ~ 6191390 (+) True G149892
TU221818 lncRNA downstream 45299 6189117 ~ 6191390 (+) False G149892
TU221851 lncRNA downstream 79439 6223257 ~ 6223783 (+) True G149913
TU221900 lncRNA downstream 175167 6318985 ~ 6319341 (+) True G149948
XM_043222542.1 mRNA upstream 45254 6022006 ~ 6069920 (+) True bcor
XM_043222947.1 mRNA upstream 103618 6009482 ~ 6011556 (+) False LOC122327524
XM_043222967.1 mRNA upstream 106988 6006482 ~ 6008186 (+) True LOC122327535
XM_043223017.1 mRNA upstream 112544 5994388 ~ 6002630 (+) False LOC122327565
XM_043222650.1 mRNA downstream 87454 6231272 ~ 6235360 (+) True sgsh
XM_043223004.1 mRNA downstream 92299 6236117 ~ 6238292 (+) True npb
XM_043222885.1 mRNA downstream 166851 6310669 ~ 6312558 (+) False LOC122327484
XM_043222884.1 mRNA downstream 166881 6310699 ~ 6312558 (+) True LOC122327484
XM_043222886.1 mRNA downstream 166881 6310699 ~ 6312558 (+) False LOC122327484
TU221722 other upstream 266588 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 308551 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 372536 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 659747 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 1010738 5103529 ~ 5104436 (+) True G149646
TU221826 other downstream 47829 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 94469 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 359096 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 564670 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 2023631 8167449 ~ 8168272 (+) True G150756

Expression Profile