LOC122327484


Basic Information

Item Value
gene id LOC122327484
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6310669 ~ 6312558 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222884.1
GAAGGCTTAGATACAgacaaataaactcaaatgcTTACGAATTAGCTGCATGTGAAGTATCTGTATCAGTGATAATGTGATGAAAAATAAGACTCTGAATCAGGTCAAGTTCAAGACTTCTACTTACAGAACCGATGTTTATggtattttatatcattttgttttacacCTTCCCATTACTGTCATTATCAGTGGACTTTTAACTGGTTCATCATCATTAGTATCCAAATGTGTTTCAGTCgcgtgactctctcctggtacaaaggaaacgtcaattttaattttgtattttaattatgtaactACGCTGTATTCGGTTAACTGTTCAAAAACGCTGATGTTTGTGTTAACATGCAGTGTGACACGTGACTATCGAGAAACAGAAGCTGAACCACAGCGGAGTACTTATTTTAGCCAACAGACAGAAAAGCCTCTTCATTAGACTTCCTTCATTCCCTCATATGgcttaaaaaatgctttgtgcACTTATTTTCTTCTGTCTATGGCTCCTGGTTGGTGagttaaacatgttttttgtatgGCTTTACGTCACTTAAATTCTGttatcgtttactcaccctcgcgCTATTTCCTGCTTACTTCTGTGGAAACACCAACAGCATTGCGTATGAAAGCAATGCGCGTCAGTGAGGTGCAGTGCTGTACCGGATCCATTTAGctatcttcaaaatatcttttgtgttgcaaaaatgaaagaaagtcaAATGTGCGCACCAACAGGGCGAGCAAATGATGACCAAAATTACgttcgatttttttttcaatcttgttattttgttttgcttggtGCGCATACAGATGGCATGAAGACGGTGCCAGTGGTGGAGGGAGATTCTGTGACTCTACACACTGATCTTACTGAGATGCAAAATATACAACGCATACAGTGGAGGTTCACACCTGACGATGCATTTATAGTCATTCAGTTTTATAAGGGGGCACCTGTTGTGAATTATTTGAATGCTGAGAGATTTAGAGACAGACTGCAGGTGGACGATCAGACTGGATCTTTGACCATCAGGAACACCAGGTCAACAGACTCCGGACTTTATCAACTACTGATAGAAAATTACATCTATTTCAATGTTACTGTCTATGCTCGTGTGCCCATTCCCATTGTCTCCAGAGACTCTTCAAACcgttcctcttcctcatcttcatcatcaggTCAGATTTGTTCACTGCTGTGTTCAGCTCTGAACGTGAGTCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagcgtgtctgatctcagcatcagtctctctctacctctggaggtggacTATCAGGAgaaaaacacctacagctgtgtgatccacaaccccatcagaaaccagacgaGACATCTGGACatcagtgaagtctgtgagACATTTGGAGACTTTGTACACTGCTGCGGTTTCACTGAAGCTGTGATTCGATTGGTCCTCTCTGCTGTGGTGGGCGCGGCTACTGTTGCCATAGTGATTTATGAAGTCAAGAGCTAAAAGAAGCGGAGAAGTTTGAATGTAGATATTTTTAGCTGGAAAAcgtttcattaaatatttatcttttatggAGTGAAGCTTACTCGGGTGTCATGCTGTGGAGATCGAGTGATTCGTTGTTTTGACCCCtctctttttaataaatcaaatgattcacaaa
>XM_043222885.1
GGGACAGAAGTGAAGGACACAAAGAGCGTTGAAGGCTTAGATACAgacaaataaactcaaatgcTTACGAATTAGCTGCATGTGAAGTATCTGTATCAGTGATAATGTGATGAAAAATAAGACTCTGAATCAGGTCAAGTTCAAGACTTCTACTTACAGAACCGATGTTTATgATGGCATGAAGACGGTGCCAGTGGTGGAGGGAGATTCTGTGACTCTACACACTGATCTTACTGAGATGCAAAATATACAACGCATACAGTGGAGGTTCACACCTGACGATGCATTTATAGTCATTCAGTTTTATAAGGGGGCACCTGTTGTGAATTATTTGAATGCTGAGAGATTTAGAGACAGACTGCAGGTGGACGATCAGACTGGATCTTTGACCATCAGGAACACCAGGTCAACAGACTCCGGACTTTATCAACTACTGATAGAAAATTACATCTATTTCAATGTTACTGTCTATGCTCGTGTGCCCATTCCCATTGTCTCCAGAGACTCTTCAAACcgttcctcttcctcatcttcatcatcaggTCAGATTTGTTCACTGCTGTGTTCAGCTCTGAACGTGAGTCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagcgtgtctgatctcagcatcagtctctctctacctctggaggtggacTATCAGGAgaaaaacacctacagctgtgtgatccacaaccccatcagaaaccagacgaGACATCTGGACatcagtgaagtctgtgagACATTTGGAGACTTTGTACACTGCTGCGGTTTCACTGAAGCTGTGATTCGATTGGTCCTCTCTGCTGTGGTGGGCGCGGCTACTGTTGCCATAGTGATTTATGAAGTCAAGAGCTAAAAGAAGCGGAGAAGTTTGAATGTAGATATTTTTAGCTGGAAAAcgtttcattaaatatttatcttttatggAGTGAAGCTTACTCGGGTGTCATGCTGTGGAGATCGAGTGATTCGTTGTTTTGACCCCtctctttttaataaatcaaatgattcacaaa
>XM_043222886.1
GAAGGCTTAGATACAgacaaataaactcaaatgcTTACGAATTAGCTGCATGTGAAGTATCTGTATCAGTGATAATGTGATGAAAAATAAGACTCTGAATCAGGTCAAGTTCAAGACTTCTACTTACAGAACCGATGTTTATggtattttatatcattttgttttacacCTTCCCATTACTGTCATTATCAGTGGACTTTTAACTGGTTCATCATCATTAGTATCCAAATGTGTTTCAGTCgcgtgactctctcctggtacaaaggaaacgtcaattttaattttgtattttaattatgtaactACGCTGTATTCGGTTAACTGTTCAAAAACGCTGATGTTTGTGTTAACATGCAGTGTGACACGTGACTATCGAGAAACAGAAGCTGAACCACAGCGGAGTACTTATTTTAGCCAACAGACAGAAAAGCCTCTTCATTAGACTTCCTTCATTCCCTCATATGgcttaaaaaatgctttgtgcACTTATTTTCTTCTGTCTATGGCTCCTGGTTGATGGCATGAAGACGGTGCCAGTGGTGGAGGGAGATTCTGTGACTCTACACACTGATCTTACTGAGATGCAAAATATACAACGCATACAGTGGAGGTTCACACCTGACGATGCATTTATAGTCATTCAGTTTTATAAGGGGGCACCTGTTGTGAATTATTTGAATGCTGAGAGATTTAGAGACAGACTGCAGGTGGACGATCAGACTGGATCTTTGACCATCAGGAACACCAGGTCAACAGACTCCGGACTTTATCAACTACTGATAGAAAATTACATCTATTTCAATGTTACTGTCTATGCTCGTGTGCCCATTCCCATTGTCTCCAGAGACTCTTCAAACcgttcctcttcctcatcttcatcatcaggTCAGATTTGTTCACTGCTGTGTTCAGCTCTGAACGTGAGTCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagcgtgtctgatctcagcatcagtctctctctacctctggaggtggacTATCAGGAgaaaaacacctacagctgtgtgatccacaaccccatcagaaaccagacgaGACATCTGGACatcagtgaagtctgtgagACATTTGGAGACTTTGTACACTGCTGCGGTTTCACTGAAGCTGTGATTCGATTGGTCCTCTCTGCTGTGGTGGGCGCGGCTACTGTTGCCATAGTGATTTATGAAGTCAAGAGCTAAAAGAAGCGGAGAAGTTTGAATGTAGATATTTTTAGCTGGAAAAcgtttcattaaatatttatcttttatggAGTGAAGCTTACTCGGGTGTCATGCTGTGGAGATCGAGTGATTCGTTGTTTTGACCCCtctctttttaataaatcaaatgattcacaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222884.1 True 1689 mRNA 0.41 3 6310699 6312558
XM_043222885.1 False 1043 mRNA 0.43 4 6310669 6312558
XM_043222886.1 False 1386 mRNA 0.41 4 6310699 6312558

Neighbor

gene id symbol gene type direction distance location
sgsh sgsh,sphm,LOC107756031,LOC107704414 coding upstream 75309 6231272 ~ 6235360 (+)
bcor bcor,LOC107756025,LOC107745971,LOC107593046 coding upstream 240749 6022006 ~ 6069920 (+)
LOC122327535 NA coding upstream 302483 6006482 ~ 6008186 (+)
LOC122327565 LOC107756023 coding upstream 308039 5994388 ~ 6002630 (+)
enc3 enc3,LOC107731329,LOC107593050,LOC107695631,LOC107586932,LOC107755983,LOC103464111,LOC103138520 coding upstream 438374 5862880 ~ 5872295 (+)
LOC122327481 NA coding downstream 2326 6314884 ~ 6316296 (+)
LOC122328229 krt97,krt96,LOC107663680,LOC107745983,LOC107739339,LOC107593038 coding downstream 31563 6344121 ~ 6347334 (+)
mrasb mras,rasm,LOC107663675,LOC107587007,LOC107653555,LOC107593037,LOC108425734 coding downstream 65134 6377692 ~ 6385265 (+)
mgat5 mgat5,LOC107745986,LOC107739338,LOC107663499,LOC107653587 coding downstream 107100 6419658 ~ 6472721 (+)
LOC122327191 r3hdm1,LOC107586957,LOC107739334,LOC107593074 coding downstream 266449 6579007 ~ 6618908 (+)
G149913 NA non-coding upstream 86886 6223257 ~ 6223783 (+)
G149892 NA non-coding upstream 119279 6189117 ~ 6191390 (+)
G149891 mid1ip1b,LOC107756028,LOC107663600,LOC107704421,LOC107593044,LOC107745972,LOC107586944 non-coding upstream 122799 6185969 ~ 6187870 (+)
LOC122327601 NA non-coding upstream 149946 6115049 ~ 6160723 (+)
LOC122327604 NA non-coding upstream 212143 6097872 ~ 6098526 (+)
G149948 NA non-coding downstream 6427 6318985 ~ 6319341 (+)
G149949 crygs1,LOC107756035,LOC107586953 non-coding downstream 7247 6319805 ~ 6320041 (+)
G150294 NA non-coding downstream 34860 6347418 ~ 6349670 (+)
G150296 NA non-coding downstream 40204 6352762 ~ 6353668 (+)
G150300 NA non-coding downstream 51047 6363605 ~ 6365101 (+)
npb npb,LOC107663585,LOC107587005,LOC107756033,LOC107704419,LOC107593099 other upstream 71312 6236117 ~ 6239357 (+)
G149895 NA other upstream 118010 6191647 ~ 6192659 (+)
LOC122327524 NA other upstream 297988 5923907 ~ 6012681 (+)
lsm7 lsm7,LOC107593053,LOC107704434 other upstream 462083 5847131 ~ 5848586 (+)
hyal2b hyal2b,LOC107695624,LOC107756016,LOC107586928,LOC107704436,LOC107593055 other upstream 486567 5810478 ~ 5824102 (+)
ccnt2b ccnt2b,LOC107593034,LOC107663476,LOC107739335,LOC107586955,LOC107653589,LOC107745988 other downstream 190356 6502914 ~ 6510456 (+)
G150369 NA other downstream 395930 6708488 ~ 6708891 (+)
G150756 NA other downstream 1854891 8167449 ~ 8168272 (+)
G150862 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 other downstream 2301731 8614289 ~ 8617605 (+)
pdzk1ip1 NA other downstream 2578064 8890622 ~ 8892199 (+)

Expression


Co-expression Network