RNA id: TU221818


Basic Information

Item Value
RNA id TU221818
length 2079
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G149892
representative False

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6189117 ~ 6191390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cGACGAAGAACCATTTTATTCATAGAGATCACGGTTGTTTACAATatcaacatacatttttgttggCATGCTAGCTggtgatgcattttaaaaagttttcttttattatacaAAGTATATTATTACTCCTCTGGTCTATCTGGAGATGTGTAGTTCATCACGTGTGTTCAGACTATGAATGTTGGACTCTAATACTTAATGAACCATTAACACAAGGGGCAGCTGCAGAAATGATGCTTTGACGTATTAATATAACAGCTACAcgtcctaaaataaaaatgaataagaaaaaaaaatatgcaaaacagtaagacaaaattaaattaaaagaagagAGATGCACACCGACACGCGTAAATATGGAATTGAGTCGACGGTACTTCACcattctaaataaaaagtaaagaaagccAAAGACTGCAGCGGTTTCTACcacacatgcaaataaatacacaataaatagaCAGCAGAGATGTCTAAAGATtggttcatttgcaaaaatgaaCCACCGAAGCGCTTTATTATGCAGAAAACCTCCAGAAAAcctgttattattactacactttatataaaattgtgAATTCAATTTCTCCAGCGTTTAACAATGTCCCGCCAACATGATCAAtctagcatgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatataaaacaaagagTCTCCCAAAGTGTTCTGACAATTGGTATAACCTTTTTAGAGcttttgtaagataaatatatttgtatctaATATTTCTCCAAGCATTCTTAGAAATATCATTCTCGTTATCCTTCATACATCGCATGCAGATTGAAAAATTCCCAGAGCTGATTACATTCTCACAGTAAAAAgccacaaaataatataaaatacagtgtCTCGCAAAGCAGATATGGTGTAAAACTGTAACTACAAtccataaaatgcaaaatgaccCATTAAATCGCCCATTAAACAGTGTTTAGATAGTACTCTGAAATATCTGCTCGTCTTACAGCGACATAAAAGCCACTAGTTATAAGGGCACATGTTAAGACTTCAGTCTATACGAGTTCGGTACAGCTATATGTGGCAGAAATGTGCTTGTTTTTGGCTTTCACGACGAAATGGATGTTTTTGACTCTGTACGTGATTTTGTGGAGTAACTTTCAACCCGGCGCTGAGATGTGGAGCgaaaaaaatgaagacaaaaaaaaagccatttctgaGATCAACCCCTTTGCCAAAGATTTTAcgacagcaacaacaacaacaaaacatctcgtcatctgtattttttttaatagttttcctcttgaaaaaaagcaattaactAACAGATCTGCATTGAAGTCACTTTTTTTAGGGGTTCCGTAACACCGCGTCCTAACCGGACGCGTGAAAATACTGCGCAAAGCcacaacagccaatcagaacggTTGATGTGTAACATACAGCTACCTGAACCAATGAGAACTCACTGTGGGCGGAGCCACCAACAGCAACGTGACAAATAGAAACCAAAATGGCggattttaaatagtttttccGTCTCAAAAAGGGATAGATATCTAAACGAACCACACGTATGTTTCAAATATTAAGTCATTTCTgtctaaaaatagaaaaagcgTCAAAAAACCACAGCTAACCCGAACGTATTTGATATGCAGCGTAGAGAGAGATTGCGATATCGATTGGCTCGTATGCGACCGGTTAGGATGCGGCGTTACAGAAAATCTGTCGATTTTAGTTCTAGTGTGTGTGAAATGGTTTCCGCAtgcaagggtttttttttgtacagagtAAAGTACGAGCGCGCAGGAGTGCGTCTTAAAACCATTTCCTTTTCCTCGCTAACGCTGCCGTTTCGAAAGGAGAGGCTTTGGTCATGGCACAACTGCATGATTAAGGAATGAcggaaaggagaaaaaaagaagaagaagaaggcaggaaagacagaatgaaagattaaaggagagagaataaaaaaaagagatgagaaAGAATGGAGTGTGCTAGCATTTTGGGGTTGCTTTCCCTTTCCAAGGTGTCGAATGTCTTCGGTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221816 lncRNA upstream 1247 6185969 ~ 6187870 (+) True G149891
XR_006247681.1 lncRNA upstream 28394 6115049 ~ 6160723 (+) True LOC122327601
TU221805 lncRNA upstream 45299 6115174 ~ 6143818 (+) False LOC122327601
XR_006247684.1 lncRNA upstream 90591 6097872 ~ 6098526 (+) True LOC122327604
TU221790 lncRNA upstream 191441 5994873 ~ 5997676 (+) True G149874
TU221851 lncRNA downstream 31867 6223257 ~ 6223783 (+) True G149913
TU221900 lncRNA downstream 127595 6318985 ~ 6319341 (+) True G149948
TU221901 lncRNA downstream 128415 6319805 ~ 6320041 (+) True G149949
TU222436 lncRNA downstream 156028 6347418 ~ 6349670 (+) True G150294
TU222438 lncRNA downstream 161372 6352762 ~ 6353668 (+) True G150296
XM_043222542.1 mRNA upstream 119197 6022006 ~ 6069920 (+) True bcor
XM_043222947.1 mRNA upstream 177561 6009482 ~ 6011556 (+) False LOC122327524
XM_043222967.1 mRNA upstream 180931 6006482 ~ 6008186 (+) True LOC122327535
XM_043223017.1 mRNA upstream 186487 5994388 ~ 6002630 (+) False LOC122327565
XM_043222650.1 mRNA downstream 39882 6231272 ~ 6235360 (+) True sgsh
XM_043223004.1 mRNA downstream 44727 6236117 ~ 6238292 (+) True npb
XM_043222885.1 mRNA downstream 119279 6310669 ~ 6312558 (+) False LOC122327484
XM_043222884.1 mRNA downstream 119309 6310699 ~ 6312558 (+) True LOC122327484
XM_043222886.1 mRNA downstream 119309 6310699 ~ 6312558 (+) False LOC122327484
TU221722 other upstream 340531 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 382494 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 446479 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 733690 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 1084681 5103529 ~ 5104436 (+) True G149646
TU221826 other downstream 257 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 46897 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 311524 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 517098 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 1976059 8167449 ~ 8168272 (+) True G150756

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU185401 True 10057 lncRNA 0.38 3 CI01000030 7296250 ~ 7306353 (-)