RNA id: XR_006247681.1


Basic Information

Item Value
RNA id XR_006247681.1
length 988
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id LOC122327601
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6115049 ~ 6160723 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTTATTCGCTTTTAAAACCCTACTTCCTGGTTGATTAACTGGCTCAAATTAGCACGcgcttttttaatttcatgtagATATTTGACAcgagaaagataaaaaaaggtCCTTATTCTTCTAGAAAAGACAACTTCCCGCAAAAGACGAGAAAGTGGAGATAAATACAAGAGACGCAACGTGGTGGTGCGCTAACAGCCTGGAAGACAAAGACGGACACCAGTTAgactgtgagagagagaggagggacgGGAATCAGGAAAGATCTGGACTCTAACACAAGACAGCGGAAGCACAAAGACTCTACATGTCGACGCTCTGGCCACGAGGCAGTCGGCCCAGCTTAAAGcctCTAGCATTAGCACGAGGAAGCGCTTCATTGAACCGAACCAAGGCCGTGCCGTCTCCAACATTACTGAGTCAACGGGGGTCATGAGAATAAATCCTCTGAGGGGCTGAGGGCCGTGCTAACCAGCTAATCCCTGACCCCTACGGTTCAGCACAGCGATGCCATGAACTGATTCCAGATCCGACGCGAACGGCTGTGGGAAGATCTGACTGCAGGTCAGTGTGGAAATGTACGAGGGTTCGGGGGAATAAACATGAACCACTGCAAGTCCCACAGTCTTCCTGGgCTTCACGGCTTGGATGTTTCCTGAGGAAGGAGCCACATGTGCTGCTGATTACAGCGCTGAATGCTAGCAGCTGGTGCGTGTGTTTACAATCACTTTTTGTCTTTATATCGAATTTATCATTGAATTTCTTAGTATGCATCACCAATGCGtgcaaatatcaaaaatatgGACGAATTTACACCAATCCGTAGTGACAAAGTAACATTTTCAGTCGTCTGTATAAGTGTCATCGCTTACTGAGATTTACTGAACTCTAAAGGCCTGTACACACCAAAGATGATaaatataatgacaaaaaaaggttttacaggTGATgattgataaaaacattgacagccaaacAGAATCtgaagtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247684.1 lncRNA upstream 16523 6097872 ~ 6098526 (+) True LOC122327604
TU221748 lncRNA upstream 102368 5923907 ~ 6012681 (+) True LOC122327524
TU221790 lncRNA upstream 117373 5994873 ~ 5997676 (+) True G149874
TU221752 lncRNA upstream 201754 5904833 ~ 5913295 (+) True G149846
TU221732 lncRNA upstream 229859 5882964 ~ 5885190 (+) True G149834
TU221816 lncRNA downstream 25246 6185969 ~ 6187870 (+) True G149891
TU221817 lncRNA downstream 28394 6189117 ~ 6191390 (+) True G149892
TU221818 lncRNA downstream 28394 6189117 ~ 6191390 (+) False G149892
TU221851 lncRNA downstream 62534 6223257 ~ 6223783 (+) True G149913
TU221900 lncRNA downstream 158262 6318985 ~ 6319341 (+) True G149948
XM_043222542.1 mRNA upstream 45129 6022006 ~ 6069920 (+) True bcor
XM_043222947.1 mRNA upstream 103493 6009482 ~ 6011556 (+) False LOC122327524
XM_043222967.1 mRNA upstream 106863 6006482 ~ 6008186 (+) True LOC122327535
XM_043223017.1 mRNA upstream 112419 5994388 ~ 6002630 (+) False LOC122327565
XM_043222650.1 mRNA downstream 70549 6231272 ~ 6235360 (+) True sgsh
XM_043223004.1 mRNA downstream 75394 6236117 ~ 6238292 (+) True npb
XM_043222885.1 mRNA downstream 149946 6310669 ~ 6312558 (+) False LOC122327484
XM_043222884.1 mRNA downstream 149976 6310699 ~ 6312558 (+) True LOC122327484
XM_043222886.1 mRNA downstream 149976 6310699 ~ 6312558 (+) False LOC122327484
TU221722 other upstream 266463 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 308426 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 372411 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 659622 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 1010613 5103529 ~ 5104436 (+) True G149646
TU221826 other downstream 30924 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 77564 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 342191 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 547765 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 2006726 8167449 ~ 8168272 (+) True G150756

Expression Profile