RNA id: XM_043223016.1


Basic Information

Item Value
RNA id XM_043223016.1
length 1035
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122327565
representative True

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5994388 ~ 6002630 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACATCACCTGCTTGTTTAActcctgttttatttatgaagtGCATCAAGAAGtcttacattttacaattagtGCTGTGAAACAATTAATCATCCGACAGCACTATTTCTCATATTTGAACATTCCCAGTTTGACTTACTGATGTGAAAAGTTCCTGTCAGTCAATATCTGTTATTGATTCATCctgatttttttctaaatgaggCATCGCTTCCAGTAAAAGCATCAGGTTGAACTTGCTTCATTTCGGTGAGTCATTcggttcattttattttttctgcagCTCAGCAGAAGCGCTTCCTCGAAAAGACAATATAAACTTCAACCCGAACCCAAACTGAACAGGAACACGTCCATCGAGCTCCAGAATGAAGACGCCGCTGCTTTCCCTGCTCTGTCTGTTCGTGTGGAGTCAGTCCACAGAAGCCTTGACCGATCAGGAGGTGGTTTTAGGACAGAGCGTGACTCTATCCTGCGAGTACCGATTAAAAGCCGTCGTTTGGTTTGTGATGAAACTTCCAGCTCGTCCGGAGATGATAATGAGAACCTTTGGATCAGAAAAGGCTGAATATTATGATGAAAAATACCGTGAGAAATATTCAGAAGGAGGCAGAAGCCGCTTAGTAATCAATAACATCAGTGAAGATGATTTGGGAATTTATTACTGTATAAAACCAGGCTTTTCTCTGAAGATCAGCGGCGGCATCAGACTGCACACCGCTGAAGCCCGAGGTGAAGTTCAGCGAGCGTGAGCGAGGAAAAACACCCATTCAGACCAGACCCAATGAAAGACCCTCAATATCTACAAGTTCAGACAAACTATGACACAGTTTCGTACTGAAGAGATTGTGTTGATTTATTACCGTTGGCTTCAAAGGATCAGAACCgcttgtttaaataaatgtgcgATTTTCGAGGTCTGTAAAACACGATTTGCTTTCgtagtaataaaaatgactaaaactgtctgaaattaaaaatgtcatgtgaGCTTCTTTATTCTTGTCAAATAAATCGACTTCGACGTGTTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221790 lncRNA upstream 3581 5994873 ~ 5997676 (+) True G149874
TU221752 lncRNA upstream 87962 5904833 ~ 5913295 (+) True G149846
TU221732 lncRNA upstream 116067 5882964 ~ 5885190 (+) True G149834
TU221724 lncRNA upstream 151339 5848992 ~ 5849918 (+) True G149829
TU221723 lncRNA upstream 152671 5847168 ~ 5848586 (+) True lsm7
XR_006247684.1 lncRNA downstream 95242 6097872 ~ 6098526 (+) True LOC122327604
XR_006247681.1 lncRNA downstream 112419 6115049 ~ 6160723 (+) True LOC122327601
TU221805 lncRNA downstream 112544 6115174 ~ 6143818 (+) False LOC122327601
TU221816 lncRNA downstream 183339 6185969 ~ 6187870 (+) True G149891
TU221817 lncRNA downstream 186487 6189117 ~ 6191390 (+) True G149892
XM_043222620.1 mRNA upstream 128962 5862880 ~ 5872295 (+) True enc3
XM_043222591.1 mRNA upstream 142033 5851315 ~ 5859224 (+) True tmprss9
XM_043222592.1 mRNA upstream 142033 5852067 ~ 5859224 (+) False tmprss9
XM_043223023.1 mRNA upstream 152961 5847131 ~ 5848296 (+) False lsm7
XM_043222667.1 mRNA upstream 161609 5831270 ~ 5839648 (+) False mfsd14a1
XM_043222967.1 mRNA downstream 3852 6006482 ~ 6008186 (+) True LOC122327535
XM_043222947.1 mRNA downstream 6852 6009482 ~ 6011556 (+) False LOC122327524
XM_043222542.1 mRNA downstream 19376 6022006 ~ 6069920 (+) True bcor
XM_043222650.1 mRNA downstream 228642 6231272 ~ 6235360 (+) True sgsh
XM_043223004.1 mRNA downstream 233487 6236117 ~ 6238292 (+) True npb
TU221722 other upstream 152671 5847168 ~ 5848586 (+) False lsm7
TU221709 other upstream 194634 5803776 ~ 5806623 (+) False tusc2b
XR_006247632.1 other upstream 258619 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 545830 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 896821 5103529 ~ 5104436 (+) True G149646
TU221826 other downstream 189017 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 235657 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 500284 6502914 ~ 6507672 (+) False ccnt2b
TU222560 other downstream 705858 6708488 ~ 6708891 (+) True G150369
TU223137 other downstream 2164819 8167449 ~ 8168272 (+) True G150756

Expression Profile