RNA id: TU221702



Basic Information


Item Value
RNA id TU221702
length 708
lncRNA type sense_over
GC content 0.27
exon number 1
gene id rad54l2
representative False

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5772335 ~ 5789390 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ATTTgataatatcattaaatatcacattataaattacaaagcgatataatactgtaatatgACAATCATTTAACTAGTCTAAAAAGATAACTAggtctgtataaaaaaaaatatggtagaTTAATCAAAGTATATACTATTATcttctttataaatattattttatataattacagaTTATCAAGTGAAAAGTTAAAGTCGTCTAAATGGATTTAGGGTGTTTACTTTGCTATTTTATAACACGCTATAAACTGCttctaattatataataaattacataacaGGCAACAAATCAATTTACGTGAATGCAATAACATATTTTACACGtatatcataaaaaaacaatatttaattaacaaattaaacaacTATGCACGGCACCAAACTACTTTCatgattgtatatattattaaattatagtaAGTAAGACCTAGCTTGAACATTATTGccattttaacatattattgCCGTTTTATAACATATAACGCAACCTACAatgaaatgcatgtttattatgtaatgAATTATGTAATAGGCTTCTATGTGGTATAGTTTTACCTGTAACGTGTGCAATAATTTAACACAATGCTTAAAACATCAAAACGCACGCACAGCATCTCAAAacgaacaacaacaaaaaaaaaaagatgaaagcaCAAACTTCCCGATTGCCTTTATTCTGTCACGGACATTCTTGTCTCGGACTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU221684 lncRNA upstream 9173 5758011 ~ 5763162 (+) True G149811
TU221682 lncRNA upstream 18522 5753494 ~ 5753813 (+) False G149810
TU221683 lncRNA upstream 18617 5753179 ~ 5753718 (+) True G149810
TU221681 lncRNA upstream 19839 5752232 ~ 5752496 (+) True G149809
TU221671 lncRNA upstream 26019 5739572 ~ 5746316 (+) False G149806
TU221714 lncRNA downstream 49942 5822984 ~ 5824102 (+) False hyal2b
TU221723 lncRNA downstream 74126 5847168 ~ 5848586 (+) True lsm7
TU221724 lncRNA downstream 75950 5848992 ~ 5849918 (+) True G149829
TU221732 lncRNA downstream 109922 5882964 ~ 5885190 (+) True G149834
TU221752 lncRNA downstream 131791 5904833 ~ 5913295 (+) True G149846
XM_043222598.1 mRNA upstream 27284 5734461 ~ 5745051 (+) True LOC122327321
XM_043222596.1 mRNA upstream 29215 5734409 ~ 5743120 (+) False LOC122327321
XM_043222597.1 mRNA upstream 29215 5734416 ~ 5743120 (+) False LOC122327321
XM_043222845.1 mRNA upstream 47127 5673011 ~ 5725208 (+) True LOC122327460
XM_043222992.1 mRNA upstream 116956 5654029 ~ 5655379 (+) True wu:fb55g09
XM_043222553.1 mRNA downstream 423 5773465 ~ 5789390 (+) False rad54l2
XM_043222741.1 mRNA downstream 21879 5794921 ~ 5802962 (+) True rassf1
XM_043222742.1 mRNA downstream 26594 5799636 ~ 5802962 (+) False rassf1
XM_043223022.1 mRNA downstream 30684 5803726 ~ 5806608 (+) False tusc2b
XM_043223021.1 mRNA downstream 30717 5803759 ~ 5806608 (+) True tusc2b
XR_006247632.1 other upstream 29697 5734408 ~ 5742638 (+) False LOC122327321
TU221516 other upstream 316908 5453165 ~ 5455427 (+) False LOC122327428
TU221415 other upstream 667899 5103529 ~ 5104436 (+) True G149646
XR_006247646.1 other upstream 1056383 4712862 ~ 4715952 (+) True LOC122327517
TU220805 other upstream 1534266 4237454 ~ 4238069 (+) False LOC122327447
TU221709 other downstream 30734 5803776 ~ 5806623 (+) False tusc2b
TU221722 other downstream 74126 5847168 ~ 5848586 (+) False lsm7
TU221826 other downstream 418605 6191647 ~ 6192659 (+) True G149895
TU221839 other downstream 465245 6238287 ~ 6239357 (+) False npb
XR_006247622.1 other downstream 729872 6502914 ~ 6507672 (+) False ccnt2b

Expression Profile